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      <title>A Blog Around The Clock</title>
      <link>http://scienceblogs.com/clock/</link>
      <description />
      <language>en</language>
      <copyright>Copyright 2009</copyright>
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         <title>The Open Laboratory 2009 - one of the last calls for submission!</title>
          <description>&lt;p&gt;&lt;span class="mt-enclosure mt-enclosure-image" style="display: inline;"&gt;&lt;img alt="OpenLab logo.jpg" src="http://scienceblogs.com/clock/OpenLab%20logo.jpg" width="448" height="73" class="mt-image-none" style="" /&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Reminder: Deadline is December 1st at midnight EST!&lt;/b&gt;&lt;/p&gt;

&lt;p&gt;Here are the submissions for OpenLab 2009 to date (under the fold). You can buy the &lt;a href="http://www.lulu.com/content/631016" target="_blank" title=""&gt;2006&lt;/a&gt;, &lt;a href="http://www.lulu.com/content/1869828" target="_blank" title=""&gt;2007&lt;/a&gt; and &lt;a href="http://www.lulu.com/content/6110823" target="_blank" title=""&gt;2008&lt;/a&gt; editions at Lulu.com. Please use &lt;a href="http://openlab.wufoo.com/forms/submission-form/" target="_blank" title=""&gt;the submission form&lt;/a&gt; to add more of your and other people's posts (remember that we are looking for original poems, art, cartoons and comics, as well as essays):&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;Make sure that the submitted posts are possible (and relatively easy) to convert into print.&lt;/strong&gt; Posts that rely too much on video, audio, color photographs, copyrighted images, or multitudes of links just won't do (I won't even include them here - there are about 520 posts here so the judges have a lot of good posts to read already so no need to bother them with obviously inappropriate entries).&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/the_open_laboratory_2009_-_one_1.php"&gt;Read the rest of this post...&lt;/a&gt; | &lt;a href="http://scienceblogs.com/clock/2009/11/the_open_laboratory_2009_-_one_1.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/vbWKa8gOfXY" height="1" width="1"/&gt;</description>
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         <category>OpenLab09</category>
         
         <pubDate>Sat, 21 Nov 2009 14:27:10 -0500</pubDate>
      <feedburner:origLink>http://scienceblogs.com/clock/2009/11/the_open_laboratory_2009_-_one_1.php</feedburner:origLink></item>
      
      <item>
         <title>Today's carnivals</title>
          <description>&lt;p&gt;&lt;strong&gt;The Giant's Shoulders&lt;/strong&gt; #17 - Darwin Sesquicentennial Edition - is up on &lt;a href="" target="_blank" title=""&gt;The Primate Diaries&lt;/a&gt;&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/todays_carnivals_454.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/OOiWw8jeSz4" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/OOiWw8jeSz4/todays_carnivals_454.php</link>
         <guid isPermaLink="false">http://scienceblogs.com/clock/2009/11/todays_carnivals_454.php</guid>
         <category>Carnivals</category>
         
         <pubDate>Sat, 21 Nov 2009 13:45:19 -0500</pubDate>
      <feedburner:origLink>http://scienceblogs.com/clock/2009/11/todays_carnivals_454.php</feedburner:origLink></item>
      
      <item>
         <title>ScienceOnline2010 - Program highlights 3</title>
          <description>&lt;p&gt;&lt;span class="mt-enclosure mt-enclosure-image" style="display: inline;"&gt;&lt;img alt="scienceonline2010logoMedium.jpg" src="http://scienceblogs.com/clock/scienceonline2010logoMedium.jpg" width="250" height="123" class="mt-image-left" style="float: left; margin: 0 20px 20px 0;" /&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;Continuing with the introductions to the sessions on the Program, here is what will happen on Saturday, January 16th at 11:30am - 12:35pm:&lt;/p&gt;

&lt;p&gt;&lt;b&gt;A.&lt;/b&gt; &lt;b&gt;Legal Aspects of publishing, sharing and blogging science - &lt;a href="http://blog.stodden.net/" target="_blank" title=""&gt;Victoria Stodden&lt;/a&gt;&lt;/b&gt;&lt;/p&gt;

&lt;p&gt;Description: Not giving legal advice, but discussion of CC-licences, copyright, Fair Use, libel laws, etc. Discuss &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Legal_Aspects/" target="_blank" title=""&gt;here&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;B.&lt;/b&gt; &lt;b&gt;Shakespeare wasn't a semantic web guy - &lt;a href="http://sciencecommons.org/about/whoweare/rees/" target="_blank" title=""&gt;Jonathan Rees&lt;/a&gt;&lt;/b&gt;&lt;/p&gt;

&lt;p&gt;Description: That which we call a rose, by any other name, wouldn't be identified by a computer as a rose. This talk will go through the Shared Name initiative which promotes community-wide use of shared names for records from public databases. The goal is to have a significant effect on the practice of bioinformatics by making it easier to share and link data sets and tools across projects. Selecting and maintaining names is a serious capacity building problem for moving the RDF world from the hacker and hobbyist community to the regular user. And a growing body of experience emphasizes that for any solution to be generally adopted, it must not only be technically sound, but also serve and empower the community of users. Discuss &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Shakespeare/" target="_blank" title=""&gt;here&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;C.&lt;/b&gt; &lt;b&gt;Citizen Science - &lt;a href="http://www.sciencecheerleader.com/" target="_blank" title=""&gt;Darlene Cavalier&lt;/a&gt;, &lt;a href="http://www.ncseagrant.org/component/content/article/59?template=clear&amp;class=about="&gt;Scott Baker&lt;/a&gt; and &lt;a href="http://twitter.com/chillnc" target="_blank" title=""&gt;Ben MacNeill&lt;/a&gt;&lt;/b&gt; &lt;/p&gt;

&lt;p&gt;Description:  Not so long ago, "citizen scientist" would have seemed to be a contradiction in terms. Science is traditionally something done by people in lab coats who hold PhDs. As with classical music or acting, amateurs might be able to appreciate science, but they could not contribute to it. Today, however, enabled by technology and empowered by social change, science-interested laypeople are transforming the way science gets done. Through a myriad of different projects, citizen scientists are collaborating with professionals, conducting field studies, and adding valuable local detail to research. Discuss &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Citizen_Science/" target="_blank" title=""&gt;here&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;D.&lt;/b&gt; &lt;b&gt;Talking Trash: Online Outreach from the Great Pacific Garbage Patch - &lt;a href="http://theoystersgarter.com/" target="_blank" title=""&gt;Miriam Goldstein&lt;/a&gt;, &lt;a href="http://lindseyhoshaw.wordpress.com/" target="_blank" title=""&gt;Lindsey Hoshaw&lt;/a&gt;, &lt;a href="http://www.diveintoyourimagination.com/about/about-annie/about-annie-164.html" target="_blank" title=""&gt;Annie Crawley&lt;/a&gt; and &lt;a href="http://www.theplasticocean.blogspot.com/" target="_blank" title=""&gt;Bonnie Monteleone&lt;/a&gt;&lt;/b&gt; &lt;/p&gt;

&lt;p&gt;Description: Debris in the North Pacific Gyre received unprecedented attention in 2009 with voyages from the Algalita Marine Research Foundation, Project Kaisei, and the Scripps Institution of Oceanography. Each voyage integrated online outreach into its mission, but emphasized very different aspects of the problem. What are the challenges of creating a major outreach effort from one of the most isolated places on earth? How can scientists, journalists, and educators balance "exciting findings live from the field!" with "highly preliminary unpublished non-peer-reviewed data that our labwork might contradict"? And why is the public so interested in the issue of trash in the ocean, anyway? Discuss &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Talking_Trash/" target="_blank" title=""&gt;here&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;E.&lt;/b&gt; &lt;b&gt;Scientific visualization - &lt;a href="http://whatitslikeontheinside.com/" target="_blank" title=""&gt;Tara Richerson (science_goddess)&lt;/a&gt;&lt;/b&gt;&lt;/p&gt;

&lt;p&gt;Description: A picture is not only worth a thousand words---it is also worth a thousand numbers. This session will focus on ways to move from raw quantitative and qualitative data to a variety of visuals that communicate with all audiences.  Discuss &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Scientific_visualization/" target="_blank" title=""&gt;here&lt;/a&gt;.&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/scienceonline2010_-_program_hi_2.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/lBZFZTfrCZk" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/lBZFZTfrCZk/scienceonline2010_-_program_hi_2.php</link>
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         <category>SO'10</category>
         
         <pubDate>Sat, 21 Nov 2009 10:50:37 -0500</pubDate>
      <feedburner:origLink>http://scienceblogs.com/clock/2009/11/scienceonline2010_-_program_hi_2.php</feedburner:origLink></item>
      
      <item>
         <title>Clock Quotes</title>
          <description>&lt;p&gt;&lt;strong&gt;I don't possess a lot of self-confidence. I'm an actor so I simply act confident every time I hit the stage. I am consumed with the fear of failing. Reaching deep down and finding confidence has made all my dreams come true. &lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;           - Arsenio Hall&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/clock_quotes_482.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/A3y5QthPkIU" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/A3y5QthPkIU/clock_quotes_482.php</link>
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         <category>Clock Quotes</category>
         
         <pubDate>Sat, 21 Nov 2009 03:52:32 -0500</pubDate>
      <feedburner:origLink>http://scienceblogs.com/clock/2009/11/clock_quotes_482.php</feedburner:origLink></item>
      
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         <title>Pets Teach Science: 16 golden retrievers explain atoms (video)</title>
          <description>&lt;p&gt;&lt;object width="445" height="364"&gt;&lt;param name="movie" value="http://www.youtube.com/v/9qwBfBugo_A&amp;hl=en_US&amp;fs=1&amp;color1=0x5d1719&amp;color2=0xcd311b&amp;border=1"&gt;&lt;/param&gt;&lt;param name="allowFullScreen" value="true"&gt;&lt;/param&gt;&lt;param name="allowscriptaccess" value="always"&gt;&lt;/param&gt;&lt;embed src="http://www.youtube.com/v/9qwBfBugo_A&amp;hl=en_US&amp;fs=1&amp;color1=0x5d1719&amp;color2=0xcd311b&amp;border=1" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="445" height="364"&gt;&lt;/embed&gt;&lt;/object&gt;&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/pets_teach_science_16_golden_r.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/WdH1LYehdP4" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/WdH1LYehdP4/pets_teach_science_16_golden_r.php</link>
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         <category>Fun</category>
         
         <pubDate>Fri, 20 Nov 2009 18:45:30 -0500</pubDate>
      <feedburner:origLink>http://scienceblogs.com/clock/2009/11/pets_teach_science_16_golden_r.php</feedburner:origLink></item>
      
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         <title>Today's carnivals</title>
          <description>&lt;p&gt;The 124th Meeting Of The &lt;strong&gt;Skeptics' Circle&lt;/strong&gt; is up on &lt;a href="http://beyondtheshortcoat.wordpress.com/2009/11/20/the-124th-meeting-of-the-skeptics-circle/" target="_blank" title=""&gt;Beyond the Short Coat&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;Friday Ark&lt;/strong&gt; #270 is up on &lt;a href="http://themodulator.org/archives/003426.html" target="_blank" title=""&gt;Modulator&lt;/a&gt;&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/todays_carnivals_453.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/-ELjlc0wTdI" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/-ELjlc0wTdI/todays_carnivals_453.php</link>
         <guid isPermaLink="false">http://scienceblogs.com/clock/2009/11/todays_carnivals_453.php</guid>
         <category>Carnivals</category>
         
         <pubDate>Fri, 20 Nov 2009 14:40:46 -0500</pubDate>
      <feedburner:origLink>http://scienceblogs.com/clock/2009/11/todays_carnivals_453.php</feedburner:origLink></item>
      
      <item>
         <title>ScienceOnline2010 - introducing the participants</title>
          <description>&lt;p&gt;&lt;span class="mt-enclosure mt-enclosure-image" style="display: inline;"&gt;&lt;img alt="scienceonline2010logoMedium.jpg" src="http://scienceblogs.com/clock/scienceonline2010logoMedium.jpg" width="250" height="123" class="mt-image-left" style="float: left; margin: 0 20px 20px 0;" /&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;As you know you can &lt;a href="https://mistersugar.wufoo.com/reports/scienceonline2010-look-whos-coming/" target="_blank" title=""&gt;see everyone who's registered&lt;/a&gt; for the &lt;a href="http://www.scienceonline2010.com/index.php/wiki/" target="_blank" title=""&gt;conference&lt;/a&gt;, but I highlight 4-6 participants every day as this may be an easier way for you to digest the list. You can also look at the &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Program/" target="_blank" title=""&gt;Program&lt;/a&gt; so see who is doing what.&lt;/p&gt;

&lt;p&gt;&lt;/p&gt;

&lt;p&gt;&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Hope Leman&lt;/b&gt; is a Research Information Technologist at &lt;a href="http://www.samhealth.org/Pages/default.aspx" target="_blank" title=""&gt;Samaritan Health Services&lt;/a&gt;. She runs &lt;a href="http://www.scangrants.com/" target="_blank" title=""&gt;ScanGrants&lt;/a&gt; (a free, subscribable (via email or RSS) online listing of grant opportunities, prizes and scholarships in the health and life sciences and community service fields), &lt;a href="http://twitter.com/hleman" target="_blank" title=""&gt;tweets&lt;/a&gt; and blogs on &lt;a href="http://significantscience.com/" target="_blank" title=""&gt;Significant Science&lt;/a&gt;. At the conference, Hope will do a demo of &lt;a href="http://www.scienceonline2010.com/index.php/wiki/ScanGrants/" target="_blank" title=""&gt;ScanGrants&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Ernie Hood&lt;/b&gt; is a freelance science writer and he hosts a weekly science radio show - &lt;a href="http://radioinvivo.net/" target="_blank" title=""&gt;Radio In Vivo&lt;/a&gt; - at the local radio station WCOM-FM in Carrboro, NC. Ernie is currently presiding over &lt;a href="http://sconc.org/" target="_blank" title=""&gt;SCONC&lt;/a&gt; - the organization of Science Communicators of North Carolina.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Elle Cayabyab Gitlin&lt;/b&gt; writes for &lt;a href="http://arstechnica.com/author/elle-cayabyab-gitlin/" target="_blank" title=""&gt;Ars Technica&lt;/a&gt;, &lt;a href="http://www.evoque.org/" target="_blank" title=""&gt;blogs&lt;/a&gt; and &lt;a href="http://twitter.com/evoque" target="_blank" title=""&gt;tweets&lt;/a&gt;. And she is always a great help to us at the conference, every year volunteering to help.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Peter Janiszewski&lt;/b&gt; is an Obesity Researcher (PhD Candidate) in the &lt;a href="http://www.queensu.ca/skhs/Graduate/CurrentStudents.html" target="_blank" title=""&gt;Exercise Physiology Lab&lt;/a&gt; at &lt;a href="http://www.queensu.ca/" target="_blank" title=""&gt;Queen's University&lt;/a&gt;, Ontario, Canada, a Science/Health Blogger at &lt;a href="http://www.obesitypanacea.com/" target="_blank" title=""&gt;Obesity Panacea&lt;/a&gt;, a freelance writer, a &lt;a href="http://www.myspace.com/peterjaniszewski" target="_blank" title=""&gt;musician&lt;/a&gt;, and a &lt;a href="http://twitter.com/PMJaniszewski" target="_blank" title=""&gt;Twitterer&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Jayme Corbell&lt;/b&gt;, another veteran of our conferences, got her PhD in chemistry at &lt;a href="http://www.chem.duke.edu/~toone/labgroup/people.html" target="_blank" title=""&gt;Duke&lt;/a&gt; and now works at  &lt;a href="http://www.catalent.com/" target="_blank" title=""&gt;Catalent&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Jonathan Lifland&lt;/b&gt; is the Media and Communications Manager at &lt;a href="http://www.pnas.org/" target="_blank" title=""&gt;PNAS (Proceedings of the National Academy of Sciences)&lt;/a&gt; and is on &lt;a href="http://twitter.com/jelifland" target="_blank" title=""&gt;Twitter&lt;/a&gt;&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/scienceonline2010_-_introducin_19.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/ebtigUuTGBc" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/ebtigUuTGBc/scienceonline2010_-_introducin_19.php</link>
         <guid isPermaLink="false">http://scienceblogs.com/clock/2009/11/scienceonline2010_-_introducin_19.php</guid>
         <category>SO'10</category>
         
         <pubDate>Fri, 20 Nov 2009 12:06:05 -0500</pubDate>
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         <title>Museum lecture traces historic Beagle voyage</title>
          <description>&lt;p&gt;&lt;/p&gt;

&lt;blockquote&gt;The North Carolina Museum of Natural Sciences hosts the final offering of its Charles Darwin Lecture Series on Tuesday, November 24 -- the 150th anniversary of Darwin's landmark publication of "The Origin of Species." Join Museum paleontologist and science historian Paul Brinkman for a free presentation titled "Charles Darwin's Beagle Voyage and the Origin of 'The Origin.'"

&lt;p&gt;Dr. Brinkman completed his PhD in History of Science at the University of Minnesota with research in the history of 19th-century natural sciences, especially geology and paleontology. He has published a number of articles on Darwin, museum history, and the history of American vertebrate paleontology. His second book, The Second American Jurassic Dinosaur Rush, is due out next year from the University of Chicago Press.&lt;/p&gt;

&lt;p&gt;Please RSVP to museum.reservations@ncmail.net -- be sure to specify the event name and date. This lecture is free of charge and seating is on a first-come, first-served basis. Doors to the Museum and auditorium will open at 6:00 pm and the presentation will begin at 6:30 pm.&lt;/p&gt;

&lt;p&gt;The Museum, in collaboration with the National Evolutionary Synthesis Center (NESCent) and the W.M. Keck Center for Behavioral Biology at North Carolina State University, has presented several talks throughout 2009 to commemorate the bicentennial of Charles Darwin's birth and the 150th anniversary of the publication of "The Origin of Species." The series showcases the Triangle region of North Carolina as a hot spot for evolutionary biology research and features prominent researchers from area universities. Stay tuned to the Museum's website [www.naturalsciences.org] for Darwin-themed events scheduled for 2010.&lt;/blockquote&gt;&lt;br /&gt;
&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/museum_lecture_traces_historic.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/hWgwK7kioEk" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/hWgwK7kioEk/museum_lecture_traces_historic.php</link>
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         <category>History of Science</category>
         
         <pubDate>Fri, 20 Nov 2009 10:14:48 -0500</pubDate>
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      <item>
         <title>New and Exciting in PLoS this week</title>
          <description>&lt;p&gt;Friday - PLoS Genetics, Pathogens, Computational Biology and ONE published today. As always, you should &lt;a href="http://everyone.plos.org/2009/04/28/rating-articles-in-plos-one/" target="_blank" title=""&gt;rate the articles&lt;/a&gt;, post &lt;a href="http://everyone.plos.org/2009/04/07/why-post-comments-on-plos-one/" target="_blank" title=""&gt;notes and comments&lt;/a&gt; and send &lt;a href="http://everyone.plos.org/2009/05/04/the-how-and-why-of-trackbacks/" target="_blank" title=""&gt;trackbacks&lt;/a&gt; when you blog about the papers.  You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week - you go and look for your own favourites:&lt;/p&gt;

&lt;p&gt;&lt;a href="http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000568" target="_blank" title=""&gt;Circadian KaiC Phosphorylation: A Multi-Layer Network&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Circadian clocks are endogenous timing mechanisms that allow living organisms to coordinate their activities with daily environmental fluctuations. In cyanobacteria, almost all the genes are rhythmically expressed with the same ~24 h period yet exhibit a variety of phase relationships and waveforms. Remarkably, the core pacemaker ticks robustly via simple biochemical reactions carried out by three Kai proteins: KaiC undergoes circadian phosphorylation in the presence of KaiA, KaiB and ATP. In this work, we propose a reaction network modeling the Kai oscillator based on the differentiation of dual phosphorylation sites. We found a dynamic diversity in KaiC phosphorylation which may serve as a potential regulatory mechanism related to the diverse-phased genome-wide expressions in cyanobacteria. In addition, we deduce that each KaiC hexamer is a single oscillator in regulating its own phosphorylation and interactions with KaiA or/and KaiB. In complex organisms, a number of key clock components possess similar activities (e.g., phosphorylation) with multiple nonequivalent active sites, and they may also show some unusual dynamic features that are embedded in the proteins' own reaction networks. We hope our work could be helpful to study the correlations between gene expressions and circadian rhythm in prokaryotic cells, even in eukaryotic cells.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000573" target="_blank" title=""&gt;Evaluation of the Oscillatory Interference Model of Grid Cell Firing through Analysis and Measured Period Variance of Some Biological Oscillators&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;For many animals, including rats, accurate spatial memory over relatively large areas is important in order to find food and shelter. Just as unique points in time can be efficiently represented by combinations of repeating elements like hours, days, and months, points in space can be represented as combinations of elements that repeat at different spatial scales. Just such a code has been identified in the brains of rats and it shows an intriguing triangular spacing of encoded locations. Two different explanations have been developed as to what general mechanism in the brain might be able to generate this unusual code. However, to date there is not conclusive experimental evidence indicating whether either of the two explanations is correct. Here we show in detail that one of the explanations, called oscillatory interference, has specific requirements regarding the amount of variability in the system that implements it. We then report data experimentally examining candidate systems to evaluate their levels of noise. The large amount of noise that we find presents a challenge to the currently suggested biological implementations of oscillatory interference, but it does not provide support for the alternative explanation.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000723" target="_blank" title=""&gt;10 Reasons to be Tantalized by the B73 Maize Genome&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Why should you read about the maize genome? Now that so many eukaryotic genomes are available, it's easy to be blasé... just another few billion bases, grist for constructing gene trees. Why is this new information, so recently shared, worth considering? I am convinced, as I propose you will be too as you read on, that both geneticists and genome consumers will benefit from the first description of the B73 maize genome [1] and equally so from the companion papers compiled in this special collection (http://collections.plos.org/plosgenetics​/maize.php ).&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007943" target="_blank" title=""&gt;On Theoretical Models of Gene Expression Evolution with Random Genetic Drift and Natural Selection&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;The relative contributions of natural selection and random genetic drift are a major source of debate in the study of gene expression evolution, which is hypothesized to serve as a bridge from molecular to phenotypic evolution. It has been suggested that the conflict between views is caused by the lack of a definite model of the neutral hypothesis, which can describe the long-run behavior of evolutionary change in mRNA abundance. Therefore previous studies have used inadequate analogies with the neutral prediction of other phenomena, such as amino acid or nucleotide sequence evolution, as the null hypothesis of their statistical inference. In this study, we introduced two novel theoretical models, one based on neutral drift and the other assuming natural selection, by focusing on a common property of the distribution of mRNA abundance among a variety of eukaryotic cells, which reflects the result of long-term evolution. Our results demonstrated that (1) our models can reproduce two independently found phenomena simultaneously: the time development of gene expression divergence and Zipf's law of the transcriptome; (2) cytological constraints can be explicitly formulated to describe long-term evolution; (3) the model assuming that natural selection optimized relative mRNA abundance was more consistent with previously published observations than the model of optimized absolute mRNA abundances. The models introduced in this study give a formulation of evolutionary change in the mRNA abundance of each gene as a stochastic process, on the basis of previously published observations. This model provides a foundation for interpreting observed data in studies of gene expression evolution, including identifying an adequate time scale for discriminating the effect of natural selection from that of random genetic drift of selectively neutral variations.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007939" target="_blank" title=""&gt;Combination of Real-Value Smell and Metaphor Expression Aids Yeast Detection&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Smell provides important information about the quality of food and drink. Most well-known for their expertise in wine tasting, sommeliers sniff out the aroma of wine and describe them using beautiful metaphors. In contrast, electronic noses, devices that mimic our olfactory recognition system, also detect smells using their sensors but describe them using electronic signals. These devices have been used to judge the freshness of food or detect the presence of pathogenic microorganisms. However, unlike information from gas chromatography, it is difficult to compare odour information collected by these devices because they are made for smelling specific smells and their data are relative intensities. Here, we demonstrate the use of an absolute-value description method using known smell metaphors, and early detection of yeast using the method. This technique may help distinguishing microbial-contamination of food products earlier, or improvement of the food-product qualities.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007933" target="_blank" title=""&gt;Motor and Linguistic Linking of Space and Time in the Cerebellum&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Recent literature documented the presence of spatial-temporal interactions in the human brain. The aim of the present study was to verify whether representation of past and future is also mapped onto spatial representations and whether the cerebellum may be a neural substrate for linking space and time in the linguistic domain. We asked whether processing of the tense of a verb is influenced by the space where response takes place and by the semantics of the verb. Responses to past tense were facilitated in the left space while responses to future tense were facilitated in the right space. Repetitive transcranial magnetic stimulation (rTMS) of the right cerebellum selectively slowed down responses to future tense of action verbs; rTMS of both cerebellar hemispheres decreased accuracy of responses to past tense in the left space and to future tense in the right space for non-verbs, and to future tense in the right space for state verbs. The results suggest that representation of past and future is mapped onto spatial formats and that motor action could represent the link between spatial and temporal dimensions. Right cerebellar, left motor brain networks could be part of the prospective brain, whose primary function is to use past experiences to anticipate future events. Both cerebellar hemispheres could play a role in establishing the grammatical rules for verb conjugation.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007927" target="_blank" title=""&gt;Genome-Wide Scan for Signatures of Human Population Differentiation and Their Relationship with Natural Selection, Functional Pathways and Diseases&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Genetic differences both between individuals and populations are studied for their evolutionary relevance and for their potential medical applications. Most of the genetic differentiation among populations are caused by random drift that should affect all loci across the genome in a similar manner. When a locus shows extraordinary high or low levels of population differentiation, this may be interpreted as evidence for natural selection. The most used measure of population differentiation was devised by Wright and is known as fixation index, or FST. We performed a genome-wide estimation of FST on about 4 millions of SNPs from HapMap project data. We demonstrated a heterogeneous distribution of FST values between autosomes and heterochromosomes. When we compared the FST values obtained in this study with another evolutionary measure obtained by comparative interspecific approach, we found that genes under positive selection appeared to show low levels of population differentiation. We applied a gene set approach, widely used for microarray data analysis, to detect functional pathways under selection. We found that one pathway related to antigen processing and presentation showed low levels of FST, while several pathways related to cell signalling, growth and morphogenesis showed high FST values. Finally, we detected a signature of selection within genes associated with human complex diseases. These results can help to identify which process occurred during human evolution and adaptation to different environments. They also support the hypothesis that common diseases could have a genetic background shaped by human evolution.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007921" target="_blank" title=""&gt;A Mechanistic Niche Model for Measuring Species' Distributional Responses to Seasonal Temperature Gradients&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Niche theory is central to understanding how species respond geographically to climate change. It defines a species' realized niche in a biological community, its fundamental niche as determined by physiology, and its potential niche--the fundamental niche in a given environment or geographic space. However, most predictions of the effects of climate change on species' distributions are limited to correlative models of the realized niche, which assume that species are in distributional equilibrium with respect to the variables or gradients included in the model. Here, I present a mechanistic niche model that measures species' responses to major seasonal temperature gradients that interact with the physiology of the organism. I then use lethal physiological temperatures to parameterize the model for bird species in North and South America and show that most focal bird species are not in direct physiological equilibrium with the gradients. Results also show that most focal bird species possess broad thermal tolerances encompassing novel climates that could become available with climate change. I conclude with discussion of how mechanistic niche models may be used to (i) gain insights into the processes that cause species to respond to climate change and (ii) build more accurate correlative distribution models in birds and other species.&lt;/blockquote&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/new_and_exciting_in_plos_this_67.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/LSdCU6vgFoo" height="1" width="1"/&gt;</description>
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         <category>Science News</category>
         
         <pubDate>Fri, 20 Nov 2009 08:54:07 -0500</pubDate>
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         <title>Clock Quotes</title>
          <description>&lt;p&gt;&lt;strong&gt;America is a large friendly dog in a small room. Every time it wags its tail it knocks over a chair. &lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;    - Arnold Joseph Toynbee&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/clock_quotes_481.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/_AaW0p65guI" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/_AaW0p65guI/clock_quotes_481.php</link>
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         <category>Clock Quotes</category>
         
         <pubDate>Fri, 20 Nov 2009 03:46:50 -0500</pubDate>
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         <title>ScienceOnline2010 - introducing the participants</title>
          <description>&lt;p&gt;&lt;span class="mt-enclosure mt-enclosure-image" style="display: inline;"&gt;&lt;img alt="scienceonline2010logoMedium.jpg" src="http://scienceblogs.com/clock/scienceonline2010logoMedium.jpg" width="250" height="123" class="mt-image-left" style="float: left; margin: 0 20px 20px 0;" /&gt;&lt;/span&gt;Continuing with the series (I get more and more feedback that people love this) introducing, a few at a time, the &lt;a href="https://mistersugar.wufoo.com/reports/scienceonline2010-look-whos-coming/" target="_blank" title=""&gt;participants&lt;/a&gt; of the &lt;a href="http://www.scienceonline2010.com/index.php/wiki/" target="_blank" title=""&gt;ScienceOnline2010 conference&lt;/a&gt;. You can also look at the &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Program/" target="_blank" title=""&gt;Program&lt;/a&gt; so see who is doing what.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Anil Dash&lt;/b&gt; is a &lt;a href="http://dashes.com/anil/" target="_blank" title=""&gt;pioneer blogger&lt;/a&gt; (and of course &lt;a href="http://twitter.com/anildash" target="_blank" title=""&gt;twitterer&lt;/a&gt;) and one of the founders of &lt;a href="http://www.sixapart.com/" target="_blank" title=""&gt;Six Apart&lt;/a&gt;, the company that built blogging platforms including MoveableType (which is used by Scienceblogs.com) and Typepad. &lt;/p&gt;

&lt;p&gt;Just yesterday, he made an official announcement that he will be leading &lt;a href="http://expertlabs.org/" target="_blank" title=""&gt;Expert Labs&lt;/a&gt; (also on &lt;a href="http://twitter.com/expertlabs" target="_blank" title=""&gt;Twitter&lt;/a&gt;) which is a new project (largely run/funded by &lt;a href="http://www.aaas.org/" target="_blank" title=""&gt;AAAS&lt;/a&gt;) to facilitate feedback by the experts (including scientists, of course) to the Obama Administration and other government officials. Read the &lt;a href="http://www.aaas.org/news/releases/2009/1118expert_labs.shtml" target="_blank" title=""&gt;press release&lt;/a&gt;, the &lt;a href="http://www.observer.com/2009/media/dash-dc-tech-guru-will-head-govt-incubator-digitize-democracy" target="_blank" title=""&gt;early media coverage&lt;/a&gt; (&lt;a href="http://www.wired.com/epicenter/2009/11/anil-dash-crowdsources-social-networks-to-inform-public-policy/" target="_blank" title=""&gt;this one&lt;/a&gt; is much better) , an &lt;a href="http://www.aaas.org/news/releases/2009/media/1118expert_labs_anil_transcript.pdf" target="_blank" title=""&gt;interview with Anil (pdf)&lt;/a&gt; and &lt;a href="http://www.aaas.org/news/releases/2009/media/1118expert_labs_interview.shtml" target="_blank" title=""&gt;a video&lt;/a&gt;. Interestingly, Anil got this job due to writing &lt;a href="http://dashes.com/anil/2009/08/the-most-interesting-new-tech-startup-of-2009.html" target="_blank" title=""&gt;a blog post&lt;/a&gt; stating that the executive branch of the federal government of the United States was the "Most Interesting New Tech Startup of 2009". &lt;/p&gt;

&lt;p&gt;At ScienceOnline2010, Anil will run the session &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Government_2.0/" target="_blank" title=""&gt;Government 2.0&lt;/a&gt; the main purpose of which is for him to get feedback from the leaders of the science and Web community on how to make Expert Labs work the best it possibly can.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Lindsey Hoshaw&lt;/b&gt; is a freelance journalist and a recent &lt;a href="http://journalism.stanford.edu/" target="_blank" title=""&gt;journalism graduate from Stanford University&lt;/a&gt;. She has stirred quite a lot of passion in the world of journalism recently by being one of the first and probably best known products of 'crowdsourced journalism' - she made a &lt;a href="http://spot.us/pitches/238" target="_blank" title=""&gt;pitch at Spot.us&lt;/a&gt; and it was successful - she &lt;a href="http://spot.us/stories/252-dissecting-the-great-pacific-garbage-patch" target="_blank" title=""&gt;collected sufficient funds&lt;/a&gt; (and the &lt;a href="http://www.facebook.com/pages/The-Garbage-Girl/106503016241" target="_blank" title=""&gt;Facebook fan page&lt;/a&gt; helped there as well) to go on a reporting trip on a research ship to the &lt;a href="http://en.wikipedia.org/wiki/Great_Pacific_Garbage_Patch" target="_blank" title=""&gt;Great Pacific Garbage Patch&lt;/a&gt;. She reported from the voyage on &lt;a href="http://lindseyhoshaw.wordpress.com/" target="_blank" title=""&gt;her blog&lt;/a&gt; and via &lt;a href="http://twitter.com/thegarbagegirl" target="_blank" title=""&gt;Twitter&lt;/a&gt; (also her &lt;a href="http://twitter.com/lindseyhoshaw" target="_blank" title=""&gt;personal account&lt;/a&gt;). I &lt;a href="http://scienceblogs.com/clock/2009/09/talkin_trash.php" target="_blank" title=""&gt;blogged about this&lt;/a&gt; before the trip started.&lt;/p&gt;

&lt;p&gt;A short summary article by Lindsey was then published in the &lt;a href="http://www.nytimes.com/2009/11/10/science/10patch.html" target="_blank" title=""&gt;New York Times&lt;/a&gt; (which, while making no promises, was interested in the story from the start). That article (and especially in comparison to her blogging) was greeted by quite a lot of commentary, some by media watchers and journalists, some by scientists. See the reactions, for example, by &lt;a href="http://www.cjr.org/the_news_frontier/trash_compactor.php?page=all" target="_blank" title=""&gt;Megan Garber&lt;/a&gt;, &lt;a href="http://seaplexscience.com/2009/11/13/millions-billions-trillions-of-scientific-errors-in-the-nyt/" target="_blank" title=""&gt;Miriam Goldstein&lt;/a&gt;, &lt;a href="http://www.john-zhu.com/blog/2009/11/12/thoughts-on-trash-talk/" target="_blank" title=""&gt;John Zhu&lt;/a&gt;, &lt;a href="http://layscience.net/node/767" target="_blank" title=""&gt;Martin Robbins&lt;/a&gt;, &lt;a href="http://www.mathewingram.com/work/2009/11/11/when-a-blog-beats-a-nyt-story/" target="_blank" title=""&gt;Mathew Ingram&lt;/a&gt; and &lt;a href="http://blogs.discovermagazine.com/intersection/2009/11/13/about-that-garbage-patch/" target="_blank" title=""&gt;Sheril Kirshenbaum&lt;/a&gt; (and &lt;a href="http://blogs.discovermagazine.com/intersection/2009/11/17/which-is-better-for-science-inaccurate-media-coverage-or-no-coverage-at-all/" target="_blank" title=""&gt;Sheril again&lt;/a&gt; - read the comment thread).&lt;/p&gt;

&lt;p&gt;The voyage, and the reporting from it (both on traditional and modern media platforms), brought into light the differences between the goals, needs, methods and ethics of journalists and those of scientists. What those differences are, and how they can be surmounted so scientists and journalists can work together and each do a better job, will be the topic of the session that Lindsay will be co-moderating - &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Talking_Trash/" target="_blank" title=""&gt;Talking Trash&lt;/a&gt; - which promises to be quite exciting!&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Ben MacNeill&lt;/b&gt; is &lt;a href="http://www.trixieupdate.com/about/" target="_blank" title=""&gt;a designer&lt;/a&gt; here in Chapel Hill. I first met Ben at the 2005 BloggerCon at UNC. When his daughter Trixie was born he started a blog, &lt;a href="http://www.trixieupdate.com/" target="_blank" title=""&gt;Trixie Update&lt;/a&gt;, on which he &lt;a href="http://www.trixieupdate.com/trixie-update-101/" target="_blank" title=""&gt;recorded and graphed everything&lt;/a&gt; he could think of about his daughter's daily patterns: when she slept, ate, had a diaper change, etc. I commented on this, from a perspective of a chronobiologist, in an old &lt;a href="http://scienceblogs.com/clock/2006/10/development_of_the_human_sleep.php" target="_blank" title=""&gt;blog post&lt;/a&gt; about the development and consolidation of circadian rhythms and sleep patterns in human infants. Trixie is far too old to have diapers changed any more, but the setup continues. Ben has developed the software further and is now offering it as an iPhone (or Web) application - the &lt;a href="http://www.trixietracker.com/" target="_blank" title=""&gt;Trixie Tracker&lt;/a&gt; which you can use, if you are a new parent, to track everything you want about your baby (and perhaps detect early if something suddenly changes and perhaps requires medical attention). Ben is also on &lt;a href="http://twitter.com/chillnc" target="_blank" title=""&gt;Twitter&lt;/a&gt;. &lt;/p&gt;

&lt;p&gt;At the conference, Ben will do a demo of &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Trixie_Tracker/" target="_blank" title=""&gt;Data-driven parenting - Trixie Tracker&lt;/a&gt; and co-moderate the session on &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Citizen_Science/" target="_blank" title=""&gt;Citizen Science&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Elia Ben-Ari&lt;/b&gt; is a freelance science writer and editor who has published in many good venues over the years. She is active on &lt;a href="http://twitter.com/smallpkg" target="_blank" title=""&gt;Twitter&lt;/a&gt;. Her latest article (which, understandably, garnered quite a lot of interest online) is &lt;a href="http://www.bioone.org/doi/full/10.1525/bio.2009.59.7.19" target="_blank" title=""&gt;Twitter: What's All the Chirping About?&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Wayne Sutton&lt;/b&gt; is a &lt;a href="http://wayne-sutton.com/" target="_blank" title=""&gt;social media maven&lt;/a&gt;. He is a partner of social media marketing agency &lt;a href="http://www.ourhashtag.com/" target="_blank" title=""&gt;OurHashtag&lt;/a&gt;, the co-host of a social media podcast at &lt;a href="http://talksocialnews.com/" target="_blank" title=""&gt;TalkSocialNews.com&lt;/a&gt;, the host of the online video show &lt;a href="http://waynesutton.tv/" target="_blank" title=""&gt;WayneSutton.TV&lt;/a&gt;, and a veteran &lt;a href="http://socialwayne.com/" target="_blank" title=""&gt;blogger&lt;/a&gt;. He is on every social networking site imaginable, but here let's just link to his &lt;a href="http://twitter.com/waynesutton" target="_blank" title=""&gt;Twitter&lt;/a&gt; account. At ScienceOnline2010, Wayne will do an Ignite talk "Why Triangle is Better than Silicon Valley".&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Cara Rousseau&lt;/b&gt; is the &lt;a href="http://www.rtp.org/main/index.php?pid=194&amp;sec=1" target="_blank" title=""&gt;Director for Partnership Initiatives&lt;/a&gt; at the &lt;a href="http://www.rtp.org/main/index.php" target="_blank" title=""&gt;Research Triangle Foundation&lt;/a&gt; (read more about it in yesterday's post), one of our biggest sponsors and hosts this year. She tweets, both as &lt;a href="http://twitter.com/cararousseau" target="_blank" title=""&gt;herself&lt;/a&gt; and for &lt;a href="http://twitter.com/TheRTP" target="_blank" title=""&gt;RTP&lt;/a&gt; and has just started the official &lt;a href="http://thertpblog.org/" target="_blank" title=""&gt;RTP blog&lt;/a&gt;. At the conference, Cara will do a demo of the &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Research_Triangle_Park/" target="_blank" title=""&gt;Research Triangle Park - how online and offline work together&lt;/a&gt;.&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/scienceonline2010_-_introducin_18.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/UrldVt51g7k" height="1" width="1"/&gt;</description>
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         <category>SO'10</category>
         
         <pubDate>Thu, 19 Nov 2009 09:49:35 -0500</pubDate>
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         <title>New and Exciting in PLoS ONE</title>
          <description>&lt;p&gt;There are &lt;a href="http://www.plosone.org/article/browse.action?month=11&amp;day=19&amp;year=2009&amp;field=date" target="_blank" title=""&gt;25 new articles&lt;/a&gt; in &lt;a href="http://www.plosone.org" target="_blank" title=""&gt;PLoS ONE&lt;/a&gt; today.  As always, you should &lt;a href="http://everyone.plos.org/2009/04/28/rating-articles-in-plos-one/" target="_blank" title=""&gt;rate the articles&lt;/a&gt;, post &lt;a href="http://everyone.plos.org/2009/04/07/why-post-comments-on-plos-one/" target="_blank" title=""&gt;notes and comments&lt;/a&gt; and send &lt;a href="http://everyone.plos.org/2009/05/04/the-how-and-why-of-trackbacks/" target="_blank" title=""&gt;trackbacks&lt;/a&gt; when you blog about the papers.  You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week - you go and look for your own favourites:&lt;/p&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007903" target="_blank" title=""&gt;The Astronomical Orientation of Ancient Greek Temples&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Despite its appearing to be a simple question to answer, there has been no consensus as to whether or not the alignments of ancient Greek temples reflect astronomical intentions. Here I present the results of a survey of archaic and classical Greek temples in Sicily and compare them with temples in Greece. Using a binomial test I show strong evidence that there is a preference for solar orientations. I then speculate that differences in alignment patterns between Sicily and Greece reflect differing pressures in the expression of ethnic identity.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007974" target="_blank" title=""&gt;Distributed Network, Wireless and Cloud Computing Enabled 3-D Ultrasound; a New Medical Technology Paradigm&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Medical technologies are indispensable to modern medicine. However, they have become exceedingly expensive and complex and are not available to the economically disadvantaged majority of the world population in underdeveloped as well as developed parts of the world. For example, according to the World Health Organization about two thirds of the world population does not have access to medical imaging. In this paper we introduce a new medical technology paradigm centered on wireless technology and cloud computing that was designed to overcome the problems of increasing health technology costs. We demonstrate the value of the concept with an example; the design of a wireless, distributed network and central (cloud) computing enabled three-dimensional (3-D) ultrasound system. Specifically, we demonstrate the feasibility of producing a 3-D high end ultrasound scan at a central computing facility using the raw data acquired at the remote patient site with an inexpensive low end ultrasound transducer designed for 2-D, through a mobile device and wireless connection link between them. Producing high-end 3D ultrasound images with simple low-end transducers reduces the cost of imaging by orders of magnitude. It also removes the requirement of having a highly trained imaging expert at the patient site, since the need for hand-eye coordination and the ability to reconstruct a 3-D mental image from 2-D scans, which is a necessity for high quality ultrasound imaging, is eliminated. This could enable relatively untrained medical workers in developing nations to administer imaging and a more accurate diagnosis, effectively saving the lives of people.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007910" target="_blank" title=""&gt;Generation and Characterization of Fmr1 Knockout Zebrafish&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Fragile X syndrome (FXS) is one of the most common known causes of inherited mental retardation. The gene mutated in FXS is named FMR1, and is well conserved from human to Drosophila. In order to generate a genetic tool to study FMR1 function during vertebrate development, we generated two mutant alleles of the fmr1 gene in zebrafish. Both alleles produce no detectable Fmr protein, and produce viable and fertile progeny with lack of obvious phenotypic features. This is in sharp contrast to published results based on morpholino mediated knock-down of fmr1, reporting defects in craniofacial development and neuronal branching in embryos. These phenotypes we specifically addressed in our knock-out animals, revealing no significant deviations from wild-type animals, suggesting that the published morpholino based fmr1 phenotypes are potential experimental artifacts. Therefore, their relation to fmr1 biology is questionable and morpholino induced fmr1 phenotypes should be avoided in screens for potential drugs suitable for the treatment of FXS. Importantly, a true genetic zebrafish model is now available which can be used to study FXS and to derive potential drugs for FXS treatment.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007924" target="_blank" title=""&gt;Emotional Modulation of Attention: Fear Increases but Disgust Reduces the Attentional Blink&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;It is well known that facial expressions represent important social cues. In humans expressing facial emotion, fear may be configured to maximize sensory exposure (e.g., increases visual input) whereas disgust can reduce sensory exposure (e.g., decreases visual input). To investigate whether such effects also extend to the attentional system, we used the "attentional blink" (AB) paradigm. Many studies have documented that the second target (T2) of a pair is typically missed when presented within a time window of about 200-500 ms from the first to-be-detected target (T1; i.e., the AB effect). It has recently been proposed that the AB effect depends on the efficiency of a gating system which facilitates the entrance of relevant input into working memory, while inhibiting irrelevant input. Following the inhibitory response on post T1 distractors, prolonged inhibition of the subsequent T2 is observed. In the present study, we hypothesized that processing facial expressions of emotion would influence this attentional gating. Fearful faces would increase but disgust faces would decrease inhibition of the second target. We showed that processing fearful versus disgust faces has different effects on these attentional processes. We found that processing fear faces impaired the detection of T2 to a greater extent than did the processing disgust faces. This finding implies emotion-specific modulation of attention. Based on the recent literature on attention, our finding suggests that processing fear-related stimuli exerts greater inhibitory responses on distractors relative to processing disgust-related stimuli. This finding is of particular interest for researchers examining the influence of emotional processing on attention and memory in both clinical and normal populations. For example, future research could extend upon the current study to examine whether inhibitory processes invoked by fear-related stimuli may be the mechanism underlying the enhanced learning of fear-related stimuli.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007896" target="_blank" title=""&gt;Synergy between Repellents and Organophosphates on Bed Nets: Efficacy and Behavioural Response of Natural Free-Flying An. gambiae Mosquitoes&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Chemicals are used on bed nets in order to prevent infected bites and to kill aggressive malaria vectors. Because pyrethroid resistance has become widespread in the main malaria vectors, research for alternative active ingredients becomes urgent. Mixing a repellent and a non-pyrethroid insecticide seemed to be a promising tool as mixtures in the laboratory showed the same features as pyrethroids. We present here the results of two trials run against free-flying Anopheles gambiae populations comparing the effects of two insect repellents (either DEET or KBR 3023, also known as icaridin) and an organophosphate insecticide at low-doses (pirimiphos-methyl, PM) used alone and in combination on bed nets. We showed that mixtures of PM and the repellents induced higher exophily, blood feeding inhibition and mortality among wild susceptible and resistant malaria vectors than compounds used alone. Nevertheless the synergistic interactions are only involved in the high mortality induced by the two mixtures. These field trials argue in favour of the strategy of mixing repellent and organophosphate on bed nets to better control resistant malaria vectors.&lt;/blockquote&gt;

&lt;p&gt;&lt;a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0007975" target="_blank" title=""&gt;Survival and Cardioprotective Benefits of Long-Term Blueberry Enriched Diet in Dilated Cardiomyopathy Following Myocardial Infarction in Rats&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;Despite remarkable progress in treatment of chronic heart failure (CHF) over the last two decades, mortality, personal suffering and cost remain staggering, and effective interventions are still a challenge. Previously we reported that a blueberry-enriched diet (BD) attenuated necroapoptosis and inflammation in periinfarct area in a rat model of myocardial infarction (MI). To test the hypothesis that BD will attenuate the course of CHF, including mortality and cardiac remodeling during the first year after induction of MI in rats. Two weeks after coronary artery ligation, rats were divided into two groups of similar average MI size, measured by echocardiography, and then12-mo dietary regimens were initiated as follows: ad libitum regular diet (control, CD, n = 27) and isocaloric food with 2% blueberry supplement (BD, n = 27) also available ad libitum. These dietary groups were compared to each other and to sham group (SH). Mortality over the 12 mo was reduced by 22% in BD compared with CD (p&lt;0.01). In the course of developing CHF, BD had no effect on the body weight, heart rate or blood pressure. Bi-monthly Echo revealed significant attenuation of the LV chamber remodeling, LV posterior wall thinning, and MI expansion in BD compared with CD. In fact, BD arrested the MI expansion. This is the first experimental evidence that a blueberry-enriched diet has positive effects on the course of CHF and thus warrants consideration for clinical evaluation.&lt;/blockquote&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/new_and_exciting_in_plos_one_216.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/Unw1nlScbgk" height="1" width="1"/&gt;</description>
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         <category>Science News</category>
         
         <pubDate>Thu, 19 Nov 2009 09:11:09 -0500</pubDate>
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      <item>
         <title>Clock Quotes</title>
          <description>&lt;p&gt;&lt;strong&gt;Success is simple. Do what's right, the right way, at the right time. &lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;               - Arnold H. Glasgow&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/clock_quotes_480.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/Rt_bsdCv348" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/Rt_bsdCv348/clock_quotes_480.php</link>
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         <category>Clock Quotes</category>
         
         <pubDate>Thu, 19 Nov 2009 03:59:39 -0500</pubDate>
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      <item>
         <title>Celebrate Darwin's 200th birthday</title>
          <description>&lt;p&gt;&lt;a href="http://www.nescent.org/index.php" target="_blank" title=""&gt;NESCent&lt;/a&gt; and &lt;a href="http://sconc.org/" target="_blank" title=""&gt;SCONC&lt;/a&gt;:&lt;/p&gt;

&lt;blockquote&gt;What: November SCONC-fest

&lt;p&gt;When: Thursday November 19th , 6-8pm&lt;/p&gt;

&lt;p&gt;Where: National Evolutionary Synthesis Center in Durham&lt;/p&gt;

&lt;p&gt;Please join us to commemorate Charles Darwin's 200th birthday and the 150th anniversary of "The Origin of Species."&lt;/p&gt;

&lt;p&gt;Learn about the wild world of Ice Age carnivores, brainy birds, and other creatures Darwin missed. Our tour guides will be four postdocs on the frontiers of biology.&lt;/p&gt;

&lt;p&gt;We'll begin at 6pm at the National Evolutionary Synthesis Center in Durham. Parking is free.&lt;/p&gt;

&lt;p&gt;National Evolutionary Synthesis Center (NESCent)&lt;br /&gt;
2024 W. Main Street, Suite A200&lt;br /&gt;
Durham, NC 27705&lt;/p&gt;

&lt;p&gt;Map: http://bit.ly/rGmKM&lt;/p&gt;

&lt;p&gt;Travel Directions: The National Evolutionary Synthesis Center is near the corner of 9th St. and W. Main St. in Durham, on the 2nd floor of the Erwin Mill Building. Free parking is available in front of the building.&lt;/p&gt;

&lt;p&gt;To RSVP please drop a note to: rsmith@nescent.org&lt;/blockquote&gt;&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/celebrate_darwins_200th_birthd.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/dyKOtyLxAlA" height="1" width="1"/&gt;</description>
         <link>http://feedproxy.google.com/~r/ABlogAroundTheClock/~3/dyKOtyLxAlA/celebrate_darwins_200th_birthd.php</link>
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         <category>Evolution</category>
         
         <pubDate>Wed, 18 Nov 2009 12:57:23 -0500</pubDate>
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         <title>ScienceOnline2010 - introducing the participants</title>
          <description>&lt;p&gt;&lt;span class="mt-enclosure mt-enclosure-image" style="display: inline;"&gt;&lt;img alt="scienceonline2010logoMedium.jpg" src="http://scienceblogs.com/clock/scienceonline2010logoMedium.jpg" width="250" height="123" class="mt-image-left" style="float: left; margin: 0 20px 20px 0;" /&gt;&lt;/span&gt;I have to say I am myself enjoying doing these introductory posts. I get to Google people, see who they are and what they've been up to lately, discover stuff about friends' past careers I did not know, find them (and follow/subscribe/friend) on Twitter, FriendFeed and Facebook, and generally get all starry-eyed about the amazing group of people who registered for the conference and who I can't wait to see. So, without further ado, here are a few more of them:&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Beth Beck&lt;/b&gt; is the Outreach Program Manager for Space Operations at &lt;a href="http://www.nasa.gov/" target="_blank" title=""&gt;NASA&lt;/a&gt; Headquarters in Washington DC. And no, she is not a rocket scientist, she is a &lt;a href="http://bethbeck.wordpress.com/about/" target="_blank" title=""&gt;political scientist&lt;/a&gt;. She &lt;a href="http://bethbeck.wordpress.com/" target="_blank" title=""&gt;blogs&lt;/a&gt; and &lt;a href="http://twitter.com/bethbeck" target="_blank" title=""&gt;tweets&lt;/a&gt;. At the conference, Beth will co-moderate the session &lt;a href="http://www.scienceonline2010.com/index.php/wiki/Broader_Impact_Done_Right/" target="_blank" title=""&gt;Broader Impact Done Right&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Henry Gee&lt;/b&gt; is a Senior Editor at &lt;a href="http://www.nature.com/" target="_blank" title=""&gt;Nature&lt;/a&gt;, founder and editor of &lt;a href="http://www.nature.com/nature/focus/arts/futures/" target="_blank" title=""&gt;Nature Futures&lt;/a&gt;, columnist on &lt;a href="http://www.bbcfocusmagazine.com/" target="_blank" title=""&gt;BBC Focus&lt;/a&gt;, editor of &lt;a href="http://www.tolkiensociety.org/ts_info/mallorn.html" target="_blank" title=""&gt;Mallorn&lt;/a&gt; (journal of the &lt;a href="http://www.tolkiensociety.org/index.html" target="_blank" title=""&gt;Tolkien Society&lt;/a&gt;), writer and editor of several science and SF &lt;a href="http://web.me.com/cromercrox/Site/Welcome.html" target="_blank" title=""&gt;books&lt;/a&gt;, a compulsive &lt;a href="http://twitter.com/cromercrox" target="_blank" title=""&gt;twitterer&lt;/a&gt; as well as a blogger both on &lt;a href="http://network.nature.com/people/henrygee/blog" target="_blank" title=""&gt;I, Editor&lt;/a&gt; and &lt;a href="http://cromercrox.blogspot.com/" target="_blank" title=""&gt;The End Of The Pier Show&lt;/a&gt;. And a &lt;a href="http://scienceblogs.com/clock/2009/07/scienceonline09_-_interview_wi_4.php" target="_blank" title=""&gt;dear personal friend&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Connie St Louis&lt;/b&gt; is the &lt;a href="http://www.city.ac.uk/journalism/people/faculty/cstlouis.html" target="_blank" title=""&gt;Director of the Science Journalism MA&lt;/a&gt; at City University, London. She is an &lt;a href="http://conniestlouis.wordpress.com/about/" target="_blank" title=""&gt;award-winning freelance broadcaster&lt;/a&gt;, journalist, writer and scientist, noted for her work at BBC Radio 4 and BBC World Service. At the conference, Connie will co-moderate (together with her student Christine Ottery) the session &lt;a href="http://www.scienceonline2010.com/index.php/wiki/How_does_a_journalist_figure_out_which_scientists_to_trust/" target="_blank" title=""&gt;How does a journalist figure out 'which scientists to trust'?&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Michael Nitabach&lt;/b&gt; is the &lt;a href="http://www.med.yale.edu/cmphysiol/faculty/facultypages/Nitabach.htm" target="_blank" title=""&gt;Assistant Professor of Cellular &amp; Molecular Physiology&lt;/a&gt; at Yale School of Medicine, the &lt;a href="http://www.med.yale.edu/neurosci/faculty.html" target="_blank" title=""&gt;Interdepartmental Neuroscience Program&lt;/a&gt; and the &lt;a href="http://info.med.yale.edu/bbs/faculty/nit_mi.html" target="_blank" title=""&gt;Department of Biological and Biomedical Sciences&lt;/a&gt; at Yale. And he is a colleague - an &lt;a href="http://scholar.google.com/scholar?oe=UTF-8&amp;sourceid=navclient&amp;gfns=1&amp;q=michael%20nitabach&amp;um=1&amp;ie=UTF-8&amp;sa=N&amp;hl=en&amp;tab=ws" target="_blank" title=""&gt;awesome chronobiologist&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Robin Ann Smith&lt;/b&gt; is the alumna of the &lt;a href="http://uwp.duke.edu/" target="_blank" title=""&gt;Duke University Writing Program&lt;/a&gt;, a freelance science writer, and the &lt;a href="http://www.nescent.org/dir/staff.php" target="_blank" title=""&gt;Communications Manager&lt;/a&gt; (and official &lt;a href="http://twitter.com/NESCent" target="_blank" title=""&gt;twitterer&lt;/a&gt;) at the &lt;a href="http://www.nescent.org/index.php" target="_blank" title=""&gt;National Evolutionary Synthesis Center (NESCent)&lt;/a&gt;. At the conference, Robin will do a demo presentation of &lt;a href="http://www.scienceonline2010.com/index.php/wiki/NESCent/" target="_blank" title=""&gt;NESCent online efforts&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;&lt;b&gt;Josh Wilson&lt;/b&gt; is the &lt;a href="http://www.lib.ncsu.edu/staff/jkwilson/" target="_blank" title=""&gt;Reference Librarian for Physical &amp; Mathematical Sciences&lt;/a&gt; at the &lt;a href="http://www.lib.ncsu.edu/" target="_blank" title=""&gt;D.H.Hill library&lt;/a&gt; at &lt;a href="http://www.ncsu.edu/" target="_blank" title=""&gt;NCSU&lt;/a&gt;, my alma mater. Josh &lt;a href="http://blogs.lib.ncsu.edu/roller/jkwilson/" target="_blank" title=""&gt;blogs&lt;/a&gt; and &lt;a href="http://twitter.com/bluestraggler" target="_blank" title=""&gt;tweets&lt;/a&gt; as well.&lt;/p&gt; &lt;a href="http://scienceblogs.com/clock/2009/11/scienceonline2010_-_introducin_17.php#commentsArea"&gt;Read the comments on this post...&lt;/a&gt;&lt;img src="http://feeds.feedburner.com/~r/ABlogAroundTheClock/~4/mjH2zf-P9Ug" height="1" width="1"/&gt;</description>
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         <category>SO'10</category>
         
         <pubDate>Wed, 18 Nov 2009 10:09:55 -0500</pubDate>
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