Goomedic.com

Bowtie : Open soure , Fast , ( Windows , MacOSX and Linux ) package for aligning short DNA sequence reads to large genomes .

Hamza Emadeen — Thu, 02 Sep 2010 09:23:21 +0000

Bowtie : is multi-platform package built for quickly aligning large sets of short DNA sequences read to large genomes . . Bowtie is an ultrafast, memory-efficient short read aligner geared toward quickly aligning large sets of short DNA sequences (reads) to large genomes. It aligns 35-base-pair reads to the human genome at a rate of [...]

Skittle Open Source Genome Viewer – Windows , Linux and Mac OSX

Hamza Emadeen — Fri, 20 Aug 2010 09:39:13 +0000

Skittle is a Genome Viewer application , built for 2D Visualization of genome sequence files . Skittle assigns four colors to the four nucleotides and the text warps the sequence to create a 2D picture based on DNA sequence . Skittle an ongoing bioinformatics project. It started as a two dimensional visualization of DNA sequences. [...]

Epi info : the Open source legacy epidemiology statistical software is coming to Linux.

Hamza Emadeen — Mon, 16 Aug 2010 07:57:32 +0000

Epi info is an open source ” public domain ” statistical software for epidemiology , released by CDC , its very old as it started in 80s , as Ms.DOS Patch files , then moved to Visual basic and using Ms.Access for its Database . Epi Info : new development road map revealed it’s going [...]

GenExplorer : Open source Educational tool for simulation Molecular biology

Hamza Emadeen — Sun, 15 Aug 2010 14:51:40 +0000

GenExplorder is an outstanding educational tool to help students to understand the ” central dogma ” of Molecular biology , GenExplorer allows students to demonstrate and simulate many process of Molecular biology , as student can track the flow of informationfrom the sequence of base pairs in the DNA of a gene through thedecoding to [...]

Kradview Open source DICOM Viewer for Linux

Hamza Emadeen — Sat, 14 Aug 2010 06:02:31 +0000

Kradview is an Open source ” GPL 3.0 ” licensed , DICOM compatible medical imaging viewer for Linux . Kradview is built using C / C++ on top of KDE libraries . Install : Download and compile Kradview on your usable Linux distro : • ./configure • make • make install Credit : Kradview is [...]

MDinfo.com Doctor-Patient social interaction . Health questions by patients

Hamza Emadeen — Fri, 13 Aug 2010 08:35:37 +0000

MDinfo.com is a social health information interactive board , the visitors can post questions and get answers from Health experts in many specialties . MDinfo is founded on the core belief that all individuals have a right to world’s vast knowledge of human health and wellness, regardless of geographic location or economic status. MDinfo is [...]

Medic.al :Digg alike Medical – Health social bookmarking and news

Hamza Emadeen — Fri, 13 Aug 2010 06:27:21 +0000

Medic.al is digg style medical and health social news and social bookmarking , Users can share news links , videos , articles or blog posts , the shared items are rated and voted by users also organized in categories . The links archive are also filtered by ” top news today , yesterday , week [...]

Cycle : Open source Calendar for women – Linux

Hamza Emadeen — Wed, 11 Aug 2010 21:24:02 +0000

Cycle is an open source project aimed to provide full featured calendar application for women . . Given a cycle length or statistics for several periods, it can calculate the days until menstruation, the days of “safe” sex, the fertile period, and the days to ovulations, and define the d.o.b. (date of birth) of a [...]

15 – Free and Open source LIMS : Laboratory information management system programs and projects

Hamza Emadeen — Wed, 11 Aug 2010 18:00:28 +0000

LIMS : is standing for ” Laboratory Information Management System ” , which is a software designed to manage laboratory data , laboratory work-flow , results validation , archiving the results in simple accessible database . There are many open source licensed LIMS , some are built for general medical laboratories , and others are [...]

LOVD Open source free and web based DNA variation database

Hamza Emadeen — Tue, 10 Aug 2010 20:22:32 +0000

LOVD ” Leiden Open (source) Variation Database ” is an open source free database built for collecting and displaying variants in the DNA sequence . LOVD focuses on the combination between a gene and a genetic (heritable) disease. Sequence variants found in patients are collected in the database , with the information about the variants [...]

Foldit : a 3d Protein Folding game : Playing science : how gaming helps research ! download for Windows , Linux and Mac OSX .

Hamza Emadeen — Sat, 07 Aug 2010 20:00:58 +0000

When first i found i could not believe , thats finally gaming can be for a good cause , and what a game : the idea is brilliant as gaming for contributing in research and end with helping patients . Well Foldit team actually done it , They aimed to create ” a revolutionary new [...]

GIMIAS Medical Image Analysis and Simulation Solution for Windows and Linux

Hamza Emadeen — Thu, 05 Aug 2010 18:00:02 +0000

GIMIAS : is a medical imaging project aimed to be workflow-oriented medical simulation and medical image analysis platform , and to solve biomedical image simulation problems . GIMIAS is extend-able through plugins as its also multi-platform ” works for windows and linux platforms ” , its developed using C++ . It provides Windows 23 bits [...]

OpenELIS : Free , Open source , Web based Enterprise Laboratory Information management System – LIMS

Hamza Emadeen — Wed, 04 Aug 2010 20:05:05 +0000

OpenELIS is an Open source LIMS ” Laboratory Information Management System ” Built with Java and released under MPL ” Mozilla Public License ” . OpenELIS has very friendly and simple UI , using a quick access menu bar on the top of the screen as well as framed windows for tasks . Features : [...]

RODS Open source Java Real-time Outbreak and Disease Surveillance for public health

Hamza Emadeen — Tue, 03 Aug 2010 20:00:52 +0000

RODS ” Real-time Outbreak and Disease Surveillance “ is an open source , Cross-platform ” Java based ” Real-time Outbreak and Disease Surveillance , It released under dual license as GPL and Affero GNU Public license . RODS is developed by RODS Laboratory back to 1999 and begin in an active development since it released as [...]

Bika : Free , Open source LIMS – Laboratory Information Management System for Windows , Linux and Mac OSX

Hamza Emadeen — Sun, 01 Aug 2010 19:09:30 +0000

Bika is a web based , free and open source LIMS ” Laboratory Information Management System ” , its developed on the top on Plone the Python framework , and licensed under : GPL . Bika`s concept is to provide a complete , interactive , multi-user , modular , extend-able and open source project for [...]

caDNAno : Free and Open source software to design 3D DNA Origami

Hamza Emadeen — Fri, 30 Jul 2010 23:00:51 +0000

caDNAno is a free and open source software for designing a 3D DNA origami , its built with Adobe AIR so its cross-platform application , all it require is Adobe AIR to be installed on your system . caDNAno is released under MIT license , The developer is offering the open source code and AS3 [...]

PsychoPy : Free , Open source project for neuroscience, psychology and psychophysics experiments

Hamza Emadeen — Fri, 30 Jul 2010 18:00:10 +0000

PsychoPy is the free and open source alternative to commercial projects like Presentation™ and e-Prime™ , Its built to allow the presentation of stimuli and collection of data . for neuroscience, psychology and psychophysics experiments. PsychoPy is giving a choice for its users to build their experiments either with coding ” scripting using python ” [...]

HQpdf.com : Search , Preview and Download online documents ( PDF , PPT , Docs )

Hamza Emadeen — Thu, 29 Jul 2010 20:45:00 +0000

HQpdf.com is a free search engine dedicated to locate , index and list online documents hosted on blogs , forums , BBS and other types of websites . It keeps on mind different documents types : Adobe PDF , Documents files DOC , and Powerpoint presentation files . HQpdf.com database is regularly checked for files [...]

ESP : Free – Open source EMR analysis and Disease reporting

Hamza Emadeen — Thu, 29 Jul 2010 20:00:06 +0000

ESP : is an open source Electronic medical record data analysis to identify and report patients with notifiable diseases to to the Massachusetts Department of Public Health. ESP as an EMR includes diagnoses, procedures, laboratory test, and treatment information, as well as patient demographic data. Development note : ESP is built with Django the Python [...]

Symptoms and Diseases Database : Free Open source PHP / Mysql Patients Records project

Hamza Emadeen — Tue, 27 Jul 2010 06:00:47 +0000

Symptoms and Diseases Database (SADDB) is a web based application created to help doctors and clinic users to store patients data . disease and symptoms . Developer notice : Its very lightweight application created using RAD php code generator Appgini . Quick overview : Installation took less than a min from me , and it [...]

Opendental : Free Open source Commercial dental clinics EMR for Windows

Hamza Emadeen — Mon, 26 Jul 2010 06:00:27 +0000

Opendental is an open source but commercial project as developed to provide an EMR database for dental clinics , Its built up with .Net technology so its basically run on Windows platforms , There is no Mono port for it so its not available yet for Linux and Mac OSX platforms : link . Opendental [...]

Python for Biology and BioInformatics tutorials , courses and a book

Hamza Emadeen — Sun, 25 Jul 2010 06:00:29 +0000

Python is one of the most used programming languages by scientists , its also a world wide most usable language as it has the most needed features any developer needs . Its also simple and easy language to learn and code with . There are many medical , biological , bioinformatics projects developed with python [...]

InVesalius Open source 3D Surgical Planning for Windows and Linux

Hamza Emadeen — Sun, 25 Jul 2010 00:00:32 +0000

InVesalius is an open source surgical diagnosis and planning , its aimed to be usable in various fields : medicine , surgery , veterinary , engineering and archeology . InVesalius is allowing reconstruction of virtual 3D models for anatomical region of focus . the reconstruction of the 3D image is based on 2D DICOM images [...]

GastrOS : Open source EMR / Endoscopic Reporting for Windows – Unreleased yet

Hamza Emadeen — Sat, 24 Jul 2010 07:00:18 +0000

GastrOS : is an open source Clinical EMR for endoscopic reporting based on openEHR and MST .Its built using .NET , so its running on Windows platforms . GastrOS is licensed under GPL , released as a part of a research at the University of Auckland to study maintainability & interoperability. The developers takes care [...]

Progress Notes : Patients Tracker for Android app for Doctors

Hamza Emadeen — Fri, 23 Jul 2010 09:00:39 +0000

Progress Notes is a small but very useful app for Google android based phone , its developed to help doctors to keep their patients important medical data , in their phones . The user ( doctor ) can keep archive for their patients data , backup it and browse , search , or view it [...]