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    <title>hpb etc.</title>
    
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    <updated>2009-11-03T17:11:30-05:00</updated>
    <subtitle>robert skipper's blog on history &amp; philosophy of biology, etc. @ the university of cincinnati</subtitle>
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        <title>P&amp;LS Darksiders Lab Project (Part 2 of ?)</title>
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        <id>tag:typepad.com,2003:post-6a00d8342734a553ef0120a65093c8970b</id>
        <published>2009-11-03T17:11:30-05:00</published>
        <updated>2009-11-03T20:03:15-05:00</updated>
        <summary>Pardon the loose way data are presented. Typepad is terrible for that sort of thing. Or at least, that's what I've found. As I mentioned in a previous post, my lab ran down the 285 articles citing CBT 1997 and WG 1998 through 2009. Those articles were scored as follows: 0 - cites to CBT or WG as mere general historical context (or did not make a connection at all); 1 - the area of contention in the article is the exchange between CBT/WG; 2 - the article uses the controversy to contextualize the paper's problem and/or uses Fisher's or Wright's work directly to support the article's central claims. We used only articles scored as a 1 or a 2. 223 articles were scored either as a 1 or 2. The group then studied the papers to determine whether they engaged one of the following nine issues: 1. Fisher's Fundamental Theory of Natural Selection (FTNS) 2. Wright's adaptive landscape metaphor 3. Wright's shifting balance process/theory 4. Importance of epistasis in evolution 5. Population structure 6. Speciation (on the theories) 7. Evolution of dominance 8. evolution in Panaxia dominula 9. evolution in Cepaea nemoralis These nine issues are either the focus of the original exchanges between Wright and Fisher, or Wade and Coyne, or both. The table shows which topics were discussed most often. 168 of 223 articles focused on one or more of the adaptive landscape, the shifting balance process (or its phases), the role of epistasis in evolution, and...</summary>
        <author>
            <name>Robert Skipper</name>
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        <category scheme="http://www.sixapart.com/ns/types#category" term="Research" />
        
        
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<div xmlns="http://www.w3.org/1999/xhtml"><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">Pardon the loose way data are presented. Typepad is terrible for that sort of thing. Or at least, that's what I've found.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">As I mentioned in a previous post, my lab ran down the 285 articles citing CBT 1997 and WG 1998 through 2009. Those articles were scored as follows: 0 - cites to CBT or WG as mere general historical context (or did not make a connection at all); 1 - the area of contention in the article is the exchange between CBT/WG; 2 - the article uses the controversy to contextualize the paper's problem and/or uses Fisher's or Wright's work directly to support the article's central claims. We used only articles scored as a 1 or a 2.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">223 articles were scored either as a 1 or 2. The group then studied the papers to determine whether they engaged one of the following nine issues:</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">1. Fisher's Fundamental Theory of Natural Selection (FTNS)</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">2. Wright's adaptive landscape metaphor</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">3. Wright's shifting balance process/theory</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">4. Importance of epistasis in evolution</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">5. Population structure</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">6. Speciation (on the theories)</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">7. Evolution of dominance</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">8. evolution in <em>Panaxia dominula</em></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">9. evolution in <em>Cepaea nemoralis</em></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">These nine issues are either the focus of the original exchanges between Wright and Fisher, or Wade and Coyne, or both. The table shows which topics were discussed most often.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><a href="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650c7e3970b-pi" style="display: inline;"><img alt="Table.001" class="asset asset-image at-xid-6a00d8342734a553ef0120a650c7e3970b " src="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650c7e3970b-320wi" /></a> <br /> </p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">168 of 223 articles focused on one or more of the adaptive landscape, the shifting balance process (or its phases), the role of epistasis in evolution, and the nature/extent of population structure. And here, really, is where we thought things got interesting. Let's leave out the adaptive landscape for now and just consider the shifting balance process, epistasis, and population structure.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><br />
The pie chart below shows that of the 85 articles scored on the shifting balance process, most authors thought that the process at least sometimes occurs in nature. (It's hard to say what "sometimes" means, but that's not something the lab can say anything about.) Obviously, this contradicts CBT's claim that the SBT is evolutionarily unimportant, i.e., that, as they say, no case is explained better by the shifting balance process than by the mass selection. When I wrote about CBT/WG back in 2002, my view was that WG were right: there's plenty of room in the evolutionary domain for Wright, Fisher, and no doubt other evolutionary theories. It looks to us like WG are vindicated on this score. In fact, only a few authors thought the shifting balance process never occurred.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"> <a href="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650c82c970b-pi" style="display: inline;"><img alt="Sb_pie.001" class="asset asset-image at-xid-6a00d8342734a553ef0120a650c82c970b " src="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650c82c970b-320wi" /></a> <br /> </p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">And, actually, I think things get more interesting turning to epistasis and population structure. Of the 71 articles taking up the issue of the role of epistasis in evolution, about half believe that epistasis is important in evolution, followed by close to half who believe that it's sometimes important --see the pie below. Now, CBT worked hard to claim that they understand the importance of epistasis in evolution and, in fact, that Fisher himself included it in his natural selection theory. I think the claim about Fisher is problematic: epistasis is relegated to the environmental component of fitness and is virtually ignored. Certainly, Fisher was not thinking about epistasis along the lines of the way that 51% of the biologists engaged in the CBT-WG disagreement were.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><a href="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650d21e970b-pi" style="display: inline;"><img alt="Epi_pie.001" class="asset asset-image at-xid-6a00d8342734a553ef0120a650d21e970b " src="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650d21e970b-320wi" /></a> <br /> <br /> </p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">Lastly, consider population structure.</p><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><a href="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650d27a970b-pi" style="display: inline;"><img alt="Popstruct_pie.001" class="asset asset-image at-xid-6a00d8342734a553ef0120a650d27a970b " src="http://drrob.typepad.com/.a/6a00d8342734a553ef0120a650d27a970b-320wi" /></a> <br /> </p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">Of the 64 articles taking up this issue, most think population structure is more Wrightian than Fisherian. That is, populations are more likely to be smallish and semi-isolated within the global population than with sufficient gene flow to treat them as large and basically panmictic. It struck me as interesting that, in fact, only a few biologists held to the claim that population structure is more Fisherian.<br /><span style="font-size: small; line-height: 15px;"><br /></span></p><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="font-size: small; line-height: 15px;">With all that said, take the results together: the shifting balance process sometimes accounts for evolutionary phenomena, epistasis is mostly evolutionarily important, and populations are structured.<br /><br /></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">A small point can be drawn from this: Coyne and crew are just wrong. In fact,  Wright seems to have had much more influence on evolutionary thought than Fisher, if we think of influence as teaching us the right kinds of lessons. After all, it was Wright who emphasized things like epistasis and population structure. (There are other small points, but let's leave them aside for the moment.)</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">A larger conclusion: It appears that epistasis and/or structured populations are more evolutionarily significant than the shifting balance process. This, I think, is unsurprising since the shifting balance process requires fairly restrictive parameters to work. But if that's true, then what can be said more generally about how evolution works? Is a strong adaptationist view compatible with epistasis singly or in combination? Or do these properties of biological systems require another somewhat general account of evolution, taking into account a shifting balance of evolutionary causes in a way different from Wright (and obviously Fisher)? Or, more difficult, are biologists in a "hunt and peck" situation, looking for whatever combinations of evolutionary processes apply in concert to any given population? That is, sometimes mass selection, sometimes selection and drift, sometimes selection and migration, and so on?</p><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="font-size: small; line-height: 15px;"><font size="3"><span style="font-size: 12px; line-height: normal;"><br /></span></font></span><span style="font-size: small; line-height: 15px;"><span style="font-size: 12px; ">In the lab's view, we might want to go out on a limb and say that it's time to drop Fisher and Wright in our studies of evolution. That is, it's time to drop big frameworks for thinking about how evolution works and trying to apply such frameworks --theories-- to the evolution of populations. Perhaps a bottom-up approach in terms of discovering evolutionary causes of evolution in populations is a better strategy in evolutionary work. Wright said, in 1988, that himself, Fisher, Haldane, and Kimura each proposed evolutionary theories and that all are correct. I would say, now, that such a view is not strong enough --abandon "theories" of evolution altogether because there just aren't any to be had. Instead, search for the combination of evolutionary causes that underwrites particular evolutionary explanations of particular cases of evolution.</span></span></p><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="font-size: small; line-height: 15px;"><br /></span><span style="font-size: small; line-height: 15px;">Let me </span>try to be a little bit clearer. Some might say that evolutionary biologists are already doing what my lab is suggesting. But I'm not convinced. I think it's plausible to think that some biologists are pursuing a kind of Wrightian strategy: there are plurality of evolutionary theories that explain the evolutionary domain. (Wade and Goodnight said this in 1998. I said it in 2002. No doubt others have said it as well. But not Coyne, Barton, and Turelli. And not others.) We are not suggesting a plurality of theories. We're suggesting that the evolutionary domain requires a (massive) plurality of particular explanations comprised of combinations of evolutionary causal processes to account for the evolution of life. There is no viable general framework like adaptationism or shifting balance or neutralism, or anything else. In this way, evolutionary biology is like, say, molecular biology. There are only causes/mechanisms, not theories. I just don't think that's what evolutionary biologists are doing. Of course, that's an empirical question.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">References:</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">Coyne, J., Barton, N., and Turelli, M. (1997), "Perspective: A Critique of Sewall Wright's Shifting Balance Theory of Evolution", <em>Evolution</em> 51: 643-671.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">Skipper, R. (2002), "The Persistence of the R. A. Fisher-Sewall Wright Controversy", <em>Biology and Philosophy</em> 17: 341-367.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">Wade, M. and Goodnight, C. (1998), "Perspective: The Theories of Fisher and Wright in the Context of Metapopulations: When Nature Does Many Small Experiments", <em>Evolution</em> 52: 1537-1548.</p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px" />
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica">Wright, S. (1988), "Surfaces of Selective Value Revisited", <em>American Naturalist</em> 31: 115-123.</p></div>
</content>


    <feedburner:origLink>http://drrob.typepad.com/hpb_etc/2009/11/pls-darksiders-lab-project-part-2-of-.html</feedburner:origLink></entry>
    <entry>
        <title>Talks</title>
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        <id>tag:typepad.com,2003:post-6a00d8342734a553ef0120a64c3667970b</id>
        <published>2009-11-02T17:13:01-05:00</published>
        <updated>2009-11-02T17:13:01-05:00</updated>
        <summary>Just gave the citation analysis talk. Too long and I'm still not sure what the data are telling us. Argh! More later. -- Post From My iPhone</summary>
        <author>
            <name>Robert Skipper</name>
        </author>
        <category scheme="http://www.sixapart.com/ns/types#category" term="Research" />
        
        
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<div xmlns="http://www.w3.org/1999/xhtml"><p>Just gave the citation analysis talk. Too long and I'm still not sure what the data are telling us. Argh!</p>

<p>More later.</p>

<p>-- Post From My iPhone<br /></p></div>
</content>


    <feedburner:origLink>http://drrob.typepad.com/hpb_etc/2009/11/talks.html</feedburner:origLink></entry>
    <entry>
        <title>P&amp;LS Darksiders Lab Project (Part 1 of 3)</title>
        <link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/HpbEtc/~3/hPFG6y8iCJs/pls-darksiders-lab-project-part-1-of-3.html" />
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        <id>tag:typepad.com,2003:post-6a00d8342734a553ef0120a678e689970c</id>
        <published>2009-10-26T16:44:25-04:00</published>
        <updated>2009-10-26T16:44:25-04:00</updated>
        <summary>It seems like every philosopher of biology wants a lab group. This year, I finally got one: four first-rate graduate students interested and competent in biological sciences, whether it's evolution, ecology, or neuroscience. The group is Frank Cartieri (first year PhD, biology), Lindsay Craig (on the market PhD, biology), Vanessa Gorley (third year PhD, neuroscience), and Clement Loo (fourth year PhD, ecology and environmental philosophy) And then there's me. Why "Darksiders?" We eschew philosophy for science. Apparently, that's going to the dark side. (And if that's so, then color me dark!) At any rate, we've got a project ready to write up, and we've got a seminar scheduled in the UC Biological Sciences Department on 2 November. Let's hope this flag flies. So what's the project? I've long wanted to know what impact the debate between Coyne and Wade over Wright's Shifting Balance Theory (in 1997-1998) was influential, if at all. (My thing is Fisher and Wright, you know. Just browse this blog.) Mike Dietrich inspired me to apply some citation analysis tools --very cool ones at that-- to the question and answer it empirically. So, I got Frank, Lindsay, Vanessa, and Clement involved and that's what we did. Starting in 1929, Fisher and Wright, and then Coyne and Wade in 1997, focused on nine key issues: Fisher's fundamental theorem, Wright's adaptive landscape metaphor, Wright's shifting balance process, the importance of epistasis in evolution, population structure, speciation, evolution of dominance, evolution in Panaxia dominula, and evolution in Cepaea nemoralis. Keeping...</summary>
        <author>
            <name>Robert Skipper</name>
        </author>
        <category scheme="http://www.sixapart.com/ns/types#category" term="Research" />
        
        
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<div xmlns="http://www.w3.org/1999/xhtml"><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="font-size: 13px; "><span style="font-size: 12px; ">It seems like every philosopher of biology wants a lab group. This year, I finally got one: four first-rate graduate students interested and competent in biological sciences, whether it's evolution, ecology, or neuroscience. The group is Frank Cartieri (first year PhD, biology), Lindsay Craig (on the market PhD, biology), Vanessa Gorley (third year PhD, neuroscience), and Clement Loo (fourth year PhD, ecology and environmental philosophy) And then there's me. Why "Darksiders?" We eschew philosophy for science. Apparently, that's going to the dark side. (And if that's so, then color me dark!)</span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="font-size: 13px; "><span style="font-size: 12px; "><br /></span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="font-size: 13px; "><span style="font-size: 12px; ">At any rate, we've got a project ready to write up, and we've got a seminar scheduled in the UC Biological Sciences Department on 2 November. Let's hope this flag flies. So what's the project?</span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="font-size: 13px; "><span style="font-size: 12px; "><br /></span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="font-size: 13px; "><span style="font-size: 12px; ">I've long wanted to know what impact the debate between Coyne and Wade over Wright's Shifting Balance Theory (in 1997-1998) was influential, if at all. (My thing is Fisher and Wright, you know. Just browse this blog.) </span></span><a href="http://www.dartmouth.edu/~dietrich/"><span style="font-size: 13px; "><span style="font-size: 12px; ">Mike Dietrich</span></span></a><span style="font-size: 13px; "><span style="font-size: 12px; "> inspired me to apply some citation analysis tools --very cool ones at that-- to the question and answer it empirically. So, I got Frank, Lindsay, Vanessa, and Clement involved and that's what we did.</span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="font-size: 13px; "><span style="font-size: 12px; "><br /></span></span></p><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="font-size: 13px; "><span style="font-size: 12px; ">Starting in 1929, Fisher and Wright, and then Coyne and Wade in 1997, focused on nine key issues: Fisher's <span style="font-size: 12px; ">fundamental theorem, Wright's adaptive landscape metaphor, Wright's shifting balance process, the importance of epistasis in evolution, population structure, speciation, evolution of dominance, evolution in </span></span></span><em><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">Panaxia dominula</span></span></span></em><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">, and evolution in</span></span></span><em><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; "> Cepaea nemoralis</span></span></span></em><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">.</span></span></span></p><p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; "><br /></span></span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">Keeping these nine issues in the air, we asked four specific questions about the fallout from 1997-1998 up to now.</span></span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica" /><ol>
<li><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">What are the persistent issues?<br /></span></span></span></li>
<li><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">What are the "dead" issues?<br /></span></span></span></li>
<li><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">What original problems were overlooked?<br /></span></span></span></li>
<li><span style="font-size: 13px; "><span style="font-size: 12px; "><span style="font-size: 12px; ">What are the most fruitful future directions?</span></span><span style="font-size: 12px; "><br /></span></span></li>
</ol>
<p />



<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="font-size: 13px; ">Here's how we went about answering these questions:<br /></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica" /><ul>
<li><span style="font-size: 13px; "><span style="font-size: 12px; ">We collected citations from </span></span><a href="http://thomsonreuters.com/products_services/science/science_products/scholarly_research_analysis/research_discovery/web_of_science"><span style="font-size: 13px; "><span style="font-size: 12px; ">Web of Science</span></span></a><span style="font-size: 13px; "><span style="font-size: 12px; "> and manually scored and counted articles cited by CBT 1997 and WG 1998 to 2009 for centrality among nine debates in the Fisher-Wright controversy and summarized the results. (Ask I'll tell you the scoring procedure.)</span></span></li>
<li><span style="font-size: 13px; "><span style="font-size: 12px; ">We used Web of Science and </span></span><a href="http://cluster.cis.drexel.edu/~cchen/citespace/"><span style="font-size: 13px; "><span style="font-size: 12px; ">Citespace</span></span></a><span style="font-size: 13px; "><span style="font-size: 12px; "> II algorithms to examine co-citations in network clusters and across time identifying "turning point" articles and common "burst phrases" to localize influence of CBT 1997 and WG 1998 to 2009.</span></span></li>
<li><span style="font-size: 13px; "><span style="font-size: 12px; ">We used Wade and Goodnight 1991 as a control to determine that CBT 1997 and WG 1998 are influencers by running citation and co-citations algorithms on WG 1991 for 1991-97 and 1997-2009 identifying "turning point" articles and common "burst phrases."</span></span></li>
<li><span style="font-size: 13px; "><span style="font-size: 12px; ">We used Web of Science algorithms to detect biological subject area influence of CBT 1997 and WG 1998 to 2009.</span><span style="font-size: 12px; "><br /></span></span></li>
</ul>
<p />






<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="font-size: 13px; "><span style="font-size: 12px; ">My own view is that we learned quite a lot from doing all this --we had 283 papers to work through using the methods I just</span> listed. In a near future post, I'll discuss the data. After that, I'll discuss what we learned --really, the best part.<br /></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="color: #111111; "><span style="font-size: 13px; "><br /></span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica"><span style="color: #111111; "><span style="font-size: 13px; ">R<span style="font-size: 12px; ">eferences:</span></span></span></p>
<p style="margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica; min-height: 14.0px"><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="color: #2d2d2d; "><br /></span></span></span></span></p>
<p style="margin: 0.0px 0.0px 10.0px 0.0px; line-height: 19.0px; font: 13.0px Helvetica; color: #333333"><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; ">Coyne, J. A., N. H. Barton, and M. Turelli (1997), “Perspective: A Critique of Sewall Wright’s Shifting Balance Theory of Evolution”, </span></span></span></span></span></span><em><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; ">Evolution</span></span></span></span></span></span></em><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; "> 51: 643-671.</span></span></span></span></span></span></p>
<p style="margin: 0.0px 0.0px 10.0px 0.0px; line-height: 19.0px; font: 13.0px Helvetica; color: #333333"><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; ">Wade, M. and C. Goodnight (1991), "Sewall Wright's Shifting Balance Theory: An Experimental Test", </span></span></span></span></span></span><em><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; ">Science</span></span></span></span></span></span></em><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; "> 253: 1015-1018.</span></span></span></span></span></span></p>
<p style="margin: 0.0px 0.0px 10.0px 0.0px; line-height: 19.0px; font: 13.0px Helvetica; color: #333333"><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; ">Wade, M. J. and C. J. Goodnight (1998), “Perspective: The Theories of Fisher and Wright in the Context of Metapopulations: When Nature Does Many Small Experiments”, </span></span></span></span></span></span><em><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; ">Evolution</span></span></span></span></span></span></em><span style="color: #111111; "><span style="font-size: 13px; "><span style="font-size: 11px; "><span style="font-size: 12px; "><span style="color: #434343; "><span style="color: #2d2d2d; "> 52: 1537-1548.</span></span></span></span></span></span></p></div>
</content>


    <feedburner:origLink>http://drrob.typepad.com/hpb_etc/2009/10/pls-darksiders-lab-project-part-1-of-3.html</feedburner:origLink></entry>
    <entry>
        <title>Facelift</title>
        <link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/HpbEtc/~3/08RguzETMrY/facelift.html" />
        <link rel="replies" type="text/html" href="http://drrob.typepad.com/hpb_etc/2009/10/facelift.html" thr:count="0" />
        <id>tag:typepad.com,2003:post-6a00d8342734a553ef0120a61e0469970b</id>
        <published>2009-10-25T14:48:41-04:00</published>
        <updated>2009-10-26T11:41:09-04:00</updated>
        <summary>My blog desperately needs a facelift. It needs other things, too, to be sure. -- Post From My iPhone</summary>
        <author>
            <name>Robert Skipper</name>
        </author>
        <category scheme="http://www.sixapart.com/ns/types#category" term="Admin" />
        <category scheme="http://www.sixapart.com/ns/types#category" term="Etc." />
        
        
<content type="xhtml" xml:lang="en-US" xml:base="http://drrob.typepad.com/hpb_etc/">
<div xmlns="http://www.w3.org/1999/xhtml"><p>My blog desperately needs a facelift. It needs other things, too, to be sure. </p><p>-- Post From My iPhone </p></div>
</content>


    <feedburner:origLink>http://drrob.typepad.com/hpb_etc/2009/10/facelift.html</feedburner:origLink></entry>
    <entry>
        <title>Students</title>
        <link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/HpbEtc/~3/SX9v3XnmOek/students.html" />
        <link rel="replies" type="text/html" href="http://drrob.typepad.com/hpb_etc/2009/05/students.html" thr:count="0" />
        <id>tag:typepad.com,2003:post-67286531</id>
        <published>2009-05-26T13:43:09-04:00</published>
        <updated>2009-05-26T13:43:09-04:00</updated>
        <summary>What do you do when your grad students show up to seminar underprepared? Degree of difficulty: you have a distinguished professor in as a guest, trying to generate discussion.</summary>
        <author>
            <name>Robert Skipper</name>
        </author>
        <category scheme="http://www.sixapart.com/ns/types#category" term="Teaching" />
        
        
<content type="xhtml" xml:lang="en-US" xml:base="http://drrob.typepad.com/hpb_etc/">
<div xmlns="http://www.w3.org/1999/xhtml"><p>What do you do when your grad students show up to seminar underprepared? Degree of difficulty: you have a distinguished professor in as a guest, trying to generate discussion.</p></div>
</content>


    <feedburner:origLink>http://drrob.typepad.com/hpb_etc/2009/05/students.html</feedburner:origLink></entry>
    <entry>
        <title>Facebook, me, and philosophy and the life sciences</title>
        <link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/HpbEtc/~3/8wnHn2hpzlw/facebook-me-and-philosophy-and-the-life-sciences.html" />
        <link rel="replies" type="text/html" href="http://drrob.typepad.com/hpb_etc/2009/05/facebook-me-and-philosophy-and-the-life-sciences.html" thr:count="0" />
        <id>tag:typepad.com,2003:post-66886327</id>
        <published>2009-05-17T07:59:15-04:00</published>
        <updated>2009-05-17T07:59:15-04:00</updated>
        <summary>Finally, after much cajoling, I relented and created a Facebook page. You can see my profile badge to the left. Take a look. More importantly, I created a Facebook page for our "philosophy and the life sciences" group here at UC. I can't make a profile badge for it. Or at least I have yet to figure out how to do so. But you can find us on Facebook.</summary>
        <author>
            <name>Robert Skipper</name>
        </author>
        <category scheme="http://www.sixapart.com/ns/types#category" term="Etc." />
        
        
<content type="xhtml" xml:lang="en-US" xml:base="http://drrob.typepad.com/hpb_etc/">
<div xmlns="http://www.w3.org/1999/xhtml"><p>Finally, after much cajoling, I relented and created a Facebook page. You can see my profile badge to the left. Take a look. More importantly, I created a Facebook page for our "philosophy and the life sciences" group here at UC. I can't make a profile badge for it. Or at least I have yet to figure out how to do so. But you can find us on <a href="http://facebook.com" target="_blank">Facebook</a>.</p></div>
</content>


    <feedburner:origLink>http://drrob.typepad.com/hpb_etc/2009/05/facebook-me-and-philosophy-and-the-life-sciences.html</feedburner:origLink></entry>
 
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