Moenkhausia is one of the most speciose genera in Characidae, currently composed of 75 nominal species of small fishes distributed across South American hydrographic basins, primarily the Amazon and Guyanas. Despite the large number of described species, studies involving a substantial number of its species designed to better understand their relationships and putative monophyly are still lacking. In this study, we analysed a large number of species of Moenkhausia to test the monophyly of the genus based on the phylogenetic analysis of DNA sequences of two mitochondrial and three nuclear genes. The in-group included 29 species of Moenkhausia, and the out-group was composed of representatives of Characidae and other members of Characiformes. All species of Moenkhausia belong to the same clade (Clade C); however, they appear distributed in five monophyletic groups along with other different genera, which means that Moenkhausia is polyphyletic and indicates the necessity of an extensive revision of the group.

Recent studies on the endemic Canarian genus Purpuraria have shown that the taxonomy of its only recognized species (P. erna) is probably erroneous. In this study, an integrative revision of the genus is performed, based on a large number of specimens and geographical sampling. As a result, (1) the diagnostic characters at the genus level are re-described, (2) Purpuraria magna n. sp. based on morphological, morphometric and genetic data is described and (3) the taxonomic status of a formerly described subspecies is clarified. Intraspecific and interspecific morphometric differences have been found, indicating that the genus is undergoing a process of morphological diversification. Nevertheless, the possibility of interspecific mating between individuals of the two species is suggested, because no significant differences have been found between their respective calling songs. Genetic analyses using mitochondrial and nuclear DNA sequences suggest that P. erna and P. magna are recent species with evidences of secondary contact episodes in the past.

The most pervasive macroecological patterns concern (1) the frequency distribution of range size, (2) the relationship between range size and species abundance and (3) the effect of body size on range size. We investigated these patterns at a regional scale using the tenebrionid beetles of Latium (Central Italy). For this, we calculated geographical range size (no. of 10-km square cells), ecological tolerance (no. of phytoclimatic units) and abundance (no. of sampled individuals) using a large database containing 3561 georeferenced records for 84 native species. For each species, we also calculated body mass and its ‘phylogenetic diversity’ on the basis of cladistic relationships. Frequency distribution of range size followed a log-normal distribution as found in many other animal groups. However, a log-normal distribution accommodated well the frequency distribution of ecological tolerance, a so far unexplored issue. Range size was correlated with abundance and ecological tolerance, thus supporting the hypothesis that a positive correlation between distribution and abundance is a reflection of interspecific differences in ecological specialization. Larger species tended to have larger ranges and broader ecological tolerance. However, contrary to what known in most vertebrates, not only small-sized, but also many medium-to-large-sized species exhibited great variability in their range size, probably because tenebrionids are not so strictly influenced by body size constraints (e.g. home ranges) as vertebrates. Moreover, in contrast to other animals, tenebrionid body size does not influence species abundances, probably because these detritivorous animals are not strongly regulated by competition. Finally, contrary to the assumption that rare species should be mainly found among lineages that split from basal nodes, rarity of a tenebrionid species was not influenced by the phylogenetic position of its tribe. However, lineages that split from more basal nodes had lower variability in terms of species geographical distribution, ecological tolerance and abundance, which suggests that lineages that split from more basal nodes are not only morphologically conservative but also tend to have an ecological ‘inertia’.

The implementation of molecular tools in parasitology has led to the discovery of numerous cryptic species. However, detailed morphological studies are needed to evaluate the cryptic nature of such species, as well as to provide an appropriate and formal description. Recent phylogenetic analyses using mitochondrial and nuclear genes have revealed that the nematode Spauligodon atlanticus, parasite of lizards of the genus Gallotia endemic to the Canary Islands, consists of two highly divergent and unrelated lineages, one in the eastern islands and the other in the western ones. This study provides a detailed morphological analysis of the two S. atlanticus lineages characterized genetically, based on body measurements and scanning electron microscopy. This integrative approach revealed phenotypic differences between them, despite their overall morphological resemblance. As a result, the new species Spauligodon occidentalis sp. nov., from the formerly western lineage, is described. The morphological similarity between the two Spauligodon species is better explained on the basis of evolutionary convergence, since both species parasitize Gallotia lizards. In addition to delimiting the new nematode species, this study highlights the importance of combining genetic and morphological data with taxonomy to uncover the nature of cryptic species and decrease taxonomic uncertainty.

Jirds (genus Meriones) comprise a group of rodents, of which the biodiversity is still poorly known. Reason for this is that several species of similar morphologies are known to occur sympatrically. In the north-west of Iran, four such species occur: Meriones tristrami, Meriones persicus, Meriones vinogradovi and Meriones libycus, prone to several issues of taxonomical ambiguity. A proper characterization of morphological distinctiveness between these species, in relation to the variation within species, could provide the required information for species diagnosis and identification. As some cranial characters of M. tristrami, M. persicus and M. vinogradovi are quite similar, demarcations of species-specific phenotypic variation have proven to be difficult. To tackle this problem, this study involves a geometric morphometric analysis of skull shape and size, incorporating a large representative sample of these four species, originating from most parts of their natural distribution range (especially for M. tristrami). It is first tested whether M. tristrami can be distinguished from the other sympatric species, and if so, to what degree the species shows a geoclimatic pattern in its skull shape and size when comparing different populations. The shape and size analyses show that M. libycus can be distinguished because of its largest skull and the relatively largest tympanic bulla, and that M. tristrami can be distinguished from the other species. At an intraspecific level in M. tristrami, the Iranian groups (Qazvin and west Iran) do not differ in shape among them, but do so in skull size. They could, however, be distinguished in skull shape from the non-Iranian populations included (Turkey and Jordan). To what degree this continuous data can now be translated into discrete and diagnostic features, useful for taxonomic purposes, remains to be studied.

Host specificity in parasites can be explained by spatial isolation from other potential hosts or by specialization and speciation of specific parasite species. The first assertion is based on allopatric speciation, the latter on differential lifetime reproductive success on different available hosts. We investigated the host specificity and cophylogenetic histories of four sympatric European bat species of the genus Myotis and their ectoparasitic wing mites of the genus Spinturnix. We sampled >40 parasite specimens from each bat species and reconstructed their phylogenetic COI trees to assess host specificity. To test for cospeciation, we compared host and parasite trees for congruencies in tree topologies. Corresponding divergence events in host and parasite trees were dated using the molecular clock approach. We found two species of wing mites to be host specific and one species to occur on two unrelated hosts. Host specificity cannot be explained by isolation of host species, because we found individual parasites on other species than their native hosts. Furthermore, we found no evidence for cospeciation, but for one host switch and one sorting event. Host-specific wing mites were several million years younger than their hosts. Speciation of hosts did not cause speciation in their respective parasites, but we found that diversification of recent host lineages coincided with a lineage split in some parasites.

Recently, the Iberian stick insect genus Pijnackeria has been erected by splitting Leptynia Pantel on the basis of several distinguishing features. In addition to Pijnackeria hispanica, the tetraploid all-female type species, molecular, karyological and SEM investigations led to the recognition of four bisexual and one triploid unisexual new species. Bisexuals' karyotypes (2n = 37/38) differ for minute traits and the haploid set is repeated, with few differences, three or four times in the polyploids that appeared to be of hybrid origin. Diagnostic morphological traits were found among body size parameters, antennal articles, male cerci, ovipositor valve and egg chorionic features. All species commonly feed on the broom Sarothamnus scoparius, but habitat disturbance appeared to induce food plant shifts. Moreover, trends from bisexuality to unisexuality through spanandry, probably related to habitat disruption, have been witnessed. The diploid species (Pijnackeria lucianae, Pijnackeria barbarae, Pijnackeria lelongi and Pijnackeria originis) have small ranges, while the polyploid hybrids (Pijnackeria masettii and P. hispanica) spread through Spain and Southern France, featuring a clear geographic parthenogenesis scenario, by colonizing wide areas and likely displacing their ancestors, or even leading them to extinction. Cyclic climatic changes and natural or anthropic habitat fragmentation may have been also of relevance in shaping present-day distribution.

A study of population connectivity of the migratory insect species, such as dronefly Eristalis tenax (Diptera, Syrphidae), has an essential importance in understanding the relative influence of the evolutionary forces and environmental features that interact in the spatial distribution of molecular and morphological diversity. However, specific study aiming to understand spatial genetic structure of dronefly populations and its migratory potential is lacking. Hence, we studied a spatial pattern of genetic and phenotypic variation of seven European populations of E. tenax incorporating landscape genetic methods using allozyme data, wing size and shape and abdominal colour pattern. Based on the observed lack of genotypic structuring, we suggested that there has been sufficient long-distance gene flow to effectively homogenize population structuring at a broader geographical scale. Wing shape similarity among populations and an overlap of abdominal colour variation showed no clear clustering related to geography, which is in congruence with genetic data. However, genetic (F_ST values) and phenotypic (wing size) data and landscape genetics indicated subdivision between the Balkan populations (four Serbian samples) and populations from Central (Germany and Switzerland) and Northern (Finland) Europe. These findings indicated a potential connection between the Central and Northern Europe supporting the Central European origin of the flies caught in Finland. Thus, by performing spatial analysis and combining genetic–morphological approach, we shed light on the movement pattern in complex landscapes and thus provided the necessary guidelines to a broad-scale analysis of this widespread generalist pollinator.

Caprella penantis is considered a cosmopolitan species and one of the most challenging caprellids in taxonomic terms because of its remarkable intraspecific morphological variation. This study examined DNA sequences from mitochondrial (COI) and nuclear (18S) markers together with morphological data from 25 localities of C. penantis, and closely related species Caprella dilatata and Caprella andreae, all traditionally considered part of the old ‘acutifrons’ complex. The large genetic divergence and reciprocally allopatric distributions point to the existence of a species complex of at least four species, of which one is reported as a cryptic species. This study provides the first evidence of cryptic speciation in the family Caprellidae, and questions the validity of some traditional morphological characters used to delimit species in the genus Caprella. Our results are consistent with the idea that main factors were probably isolation by distance and ecological traits, promoting diversification in C. penantis. The strong genetic structure reported for this species in the Iberian Peninsula and Moroccan coasts also suggests restriction to dispersal as well as the presence of refugial areas. These results highlight the utility of the COI and 18S genes in combination with morphological characters for shedding light on systematic questions in caprellids, and patterns of genetic connectivity.

Evolutionary convergence of phenotypic traits provides evidence for their functional success. The origin of the orb web was a critical event in the diversification of spiders that facilitated a spectacular radiation of approximately 12 000 species and promoted the evolution of novel web types. How the orb web evolved from ancestral web types, and how many times orb-like architectures evolved in spiders, has been debated for a long time. The little known spider genus Fecenia (Psechridae) constructs a web that resembles the archetypical orb web, but morphological data suggest that Psechridae (Psechrus + Fecenia) does not belong in Orbiculariae, the ‘true orb weavers’, but to the ‘retrolateral tibial apophysis (RTA) clade’ consisting mostly of wandering spiders, but also including spiders building less regular webs. Yet, the data are sparse and no molecular phylogenetic study has estimated Fecenia's exact position in the tree of life. Adding new data to sequences pulled from GenBank, we reconstruct a phylogeny of Entelegynae and phylogenetically test the monophyly and placement of Psechridae, and in doing so, the alternative hypotheses of monophyletic origin of the orb web and the pseudo-orb versus their independent origins, a potentially spectacular case of behavioural convergence. We also discuss the implications of our results for Entelegynae systematics. Our results firmly place a monophyletic Psechridae within the RTA clade, phylogenetically distant from true orb weavers. The architectural similarities of the orb and the pseudo-orb are therefore clearly convergent, as also suggested by detailed comparisons of these two web types, as well as the spiders' web-building behaviours and ontogenetic development. The convergence of Fecenia webs with true orbs provides a remarkable opportunity to investigate how these complex sets of traits may have interacted during the evolution of the orb.

Transferred copies of mitochondrial DNA (mtDNA) into the nuclear genome (numts) have been reported in several Hymenoptera species, even at a high density in the honey bee nuclear genome. The accidental amplification of numts in phylogenetic studies focused on mtDNA highlights the importance of a correct determination of numts and their related mtDNA sequences. We report here the presence of numts derived from a mitochondrial rDNA 16S gene in the genome of the stingless bee species Melipona colimana and M. fasciata (tribe Meliponini) from Western Mexico. PCR products were cloned in both species obtaining thirty paralogous numts. Numts were identified by the presence of insertions and deletions and the disruption of the 16S secondary structure. Further phylogenetic analyses including alternative mitochondrial cox1 and nuclear ITS1 genes have revealed the presence of another numt (cox1) in the nuclear genome of these two species, and place both as sister lineages within the subgenus Michmelia. This is one of the first studies reporting the presence of numts in Meliponini species, and supports previous studies suggesting frequent transfer of mtDNA to the nuclear genome in Hymenoptera.

We assess whether correlative paleoclimatic models of species ranges accurately predict genetic diversity patterns in species of distinct life histories traits in the Atlantic Forest (AF) of Brazil. To this end, we use sequences of the mitochondrial gene ND2 from Dendropsophus elegans and Chiasmocleis carvalhoi – summarized in the shape of phylogenies and population genetic statistics – and maximum entropy models of species distributions under current, 21 kya BP and 120 kya BP climatic reconstructions. The two target species have distinct ranges, habitat tolerances, rates of reproduction and dispersal abilities, yet are endemic to the AF. Although the more restricted and semi-fossorial C. carvalhoi is associated with forested habitats and thought to be a poor disperser, the widely ranged arboreal D. elegans inhabits open areas such as pastures and human-impacted regions of the AF, and is easily found perched on herbaceous vegetation in inundated areas. We had anticipated that correlative distribution models of the broadly distributed D. elegans would perform better then models of the narrowly ranged C. carvalhoi, thus better predicting current patterns of genetic diversity. The results demonstrate poor predictive ability of climate-based models of C. carvalhoi under current climatic conditions, suggesting that factors such as biotic interactions or dispersal ability may be playing a central role in defining this species distribution – both now and in the recent past. Models under current climate are nonetheless accurate in the broadly ranged D. elegans. As a corollary, paleoclimatic models accurately predicted patterns of diversity of the ND2 mitochondrial gene in D. elegans, but not in C. carvalhoi. We attribute these distinct responses to the poor explanatory power of paleodistributions models when applied to species that violate the basic assumption of the environment as main driver of distribution patterns. This calls for a careful use of distribution models for the purpose of evolutionary biogeographical inference. Like C. carvalhoi, other species whose ranges are not yet at equilibrium, or which are impacted by competitor, parasite or pathogen presence, may not be suitable to the combined use of paleoclimatic-model based phylogeographic inference, as here implemented – despite relatively high area under the curve values.

Historical and ecological processes have deeply affected biogeographic patterns of animals. Studying morphological variability of species, using classical and spatial analyses, can elucidate these patterns and give insights on both processes. Morphological variability of the endemic Iberian viper Vipera seoanei is examined to identify morphological coherent groups, biogeographic patterns and the putative role of abiotic pressures in the geographic variation of morphological variation. Results from classic and spatial multivariate analyses over 27 morphometric traits for 468 specimens from the global range of the species were integrated. Classic analyses reported large morphological variability and confirmed the differentiation of two coherent groups, which are representatives of current subspecies. Spatial analyses reported a geographic gradient pattern from western Cantabrian Mountains to the rest of the study area. Areas of high morphological variability were found, and two spatial coherent groups with an integration zone were recognized. Significant spatial correlations and trends suggest that some traits could be under selection and may display adaptations to local environments. Although observed patterns can be attributed to Pleistocene climatic cycles, an adaptive diversification of the species is supported. The combination of classical and spatial multivariate analyses is a useful methodology to identify morphological patterns and infer underlying factors.

Eremiadinae, one of three subfamilies of Lacertidae, are distributed throughout Asia and Africa. Previous phylogenetic studies suggested that one of the main groups of Eremiadinae (the Ethiopian clade) consist of two clades with predominately East-African and South-African distribution. Yet, especially the latter one, which includes the genera Pedioplanis, Meroles, Ichnotropis, Tropidosaura and Australolacerta, was not well supported in the molecular phylogenetic analysis. In this study, we analysed the phylogenetic relationships among the genera of the ‘South African clade’ to assess whether this group actually forms a highly supported clade and to address questions concerning the monophyly of the genera. We sequenced sections of the widely used mitochondrial genes coding for 16S rRNA, 12S rRNA and cytochrome b (altogether 2045 bp) as well as the nuclear genes c-mos, RAG-1, PRLR, KIF24, EXPH5 and RAG-2 (altogether 4473 bp). The combined data set increased the support values for several nodes considerably. Yet, the relationships among five major lineages within the ‘South African clade’ are not clearly resolved even with this large data set. We interpret this as a ‘hard polytomy’ due to fast radiation within the South African lacertids. The combined tree based on nine marker genes provides strong support for the ‘South African Clade’ and its sister group relationship with the ‘East African Clade’. Our results confirm the genus Tropidosaura as a monophylum, while Ichnotropis is paraphyletic in our trees: Ichnotropis squamulosa appears more closely related to Meroles than to Ichnotropis capensis. Furthermore, the monophyly of Meroles is questionable as well. Based on our results, I. squamulosa should be transferred from Ichnotropis into the genus Meroles. Also, the two species of Australolacerta (A. australis and A. rupicola) are very distantly related and the genus is perhaps paraphyletic, too. Finally we propose a phylogeographical scenario in the context of palaeoclimatic data and compare it with a previously postulated hypothesis.

Approximately 120 years after its description, this is the first thorough systematic review of the agamid genus Xenagama. Currently, the genus includes two extraordinary species, characterized by strongly discoidal tails. Both species are only known from a few localities in north-eastern Ethiopia and northern Somalia and are represented by a small number of specimens in museum collections. Morphological and mitochondrial (16S) DNA sequence data revealed that Xenagama batillifera is a complex of two cryptic species and the reassignment of Acanthocercus zonurus to the genus Xenagama is supported by morphological analyses. Herein, we describe specimens previously recognized as a geographic variant of X. batillifera as a new species and compare it to other whorl-tailed lizards of the genera Xenagama and Acanthocercus from the Horn of Africa, underscoring the significance of this poorly known but important region for agamid evolution. Among other features, the new species is characterized by possessing heterogeneous body scalation, no nuchal crest and no tufts of elongated scales around the ear. Similar to Xenagama batillifera or Xenagama taylori, and distinct to other African agamid lizards, the tail is shorter than the body and head, but the tail base is less discoidal than in X. batillifera or especially X. taylori and gradually merges into the terminal filament. The discoidal part of the tail is arranged in whorls with one scale ring each, whereas the filament is not distinctly whorled.

Phylogenetic relationships within Hydrophilidae were examined by analyses of separate and combined nuclear and mitochondrial markers (28S rRNA, 18S rRNA, 16S rRNA, 12S rRNA, COI and COII genes). The preferred (Bayesian) tree topology suggests a sister group relationship between Spercheidae and Hydrophilidae, supporting the ‘hydrophilid lineage’; Epimetopidae are placed on the base of the ‘helophorid branch’, the monophyly of Sphaeridiinae is highly supported, nested deeply within Hydrophilidae closest to Enochrus, making Hydrophilinae and Acidocerini paraphyletic; Hydrobius appears as sister taxon to (Hydrochara + Hydrophilus) without a closer relationship to Acidocerini; the hydrophiloid–histeroid sister group relationship is confirmed. The topology of several taxa remains contradictory, and requires further investigations with a larger taxon sampling and additional molecular markers.