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	<title>Parry and Carney</title>
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	<modified>2008-01-16T20:00:47Z</modified>
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			<link rel="start" href="http://feeds.feedburner.com/ParryAndCarney" type="application/atom+xml" /><feedburner:browserFriendly>This is an XML content feed. It is intended to be viewed in a newsreader or syndicated to another site, subject to copyright and fair use.</feedburner:browserFriendly><entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[A Three-Pound Monkey Brain]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/article/2008/01/a-three-pound-monkey-brain.html" />
		<id>http://www.parryandcarney.com/archives/article/2008/01/a-three-pound-monkey-brain.html</id>
		<modified>2008-01-16T13:00:47Z</modified>
		<issued>  2008-01-16T13:00:47Z</issued>
		
	<dc:subject>Article</dc:subject>			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/article/2008/01/a-three-pound-monkey-brain.html"><![CDATA[<p>So, as anyone still watching this site must have realized by now, I no longer have time to do a weekly comic strip. I do, however, sometimes have time to write stuff about paleontology, systematics, etc. A couple of months ago, I started a new blog called <a href="http://3lbmonkeybrain.blogspot.com"><i>A Three-Pound Monkey Brain</i></a>. Today, for example, I posted on the new gigantic fossil rodent, <i>Josephaoartigasia monesi</i>. <a href="http://3lbmonkeybrain.blogspot.com/2007/11/welcome-to-brain.html">The first post</a> sort of explains what the blog is about (sort of).</p>

<p>Enjoy!</p>
]]></content>
		</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Back!]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/article/2007/05/back.html" />
		<id>http://www.parryandcarney.com/archives/article/2007/05/back.html</id>
		<modified>2007-05-15T00:01:20Z</modified>
		<issued>  2007-05-15T00:01:20Z</issued>
		
	<dc:subject>Article</dc:subject>			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/article/2007/05/back.html"><![CDATA[<p>Sorry about the three-month hiatus, everyone. Unfortunately, this strip isn&#8217;t my first duty, and my other duties got the better of me for a while. I&#8217;ll try and give a head&#8217;s-up next time. (August, for one, is looking possibly a bit hairy&#8230;.)</p>
]]></content>
		</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Play-Acting]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/comic/2007/05/play-acting.html" />
		<id>http://www.parryandcarney.com/archives/comic/2007/05/play-acting.html</id>
		<modified>2007-05-15T00:00:36Z</modified>
		<issued>  2007-05-15T00:00:36Z</issued>
		
	<dc:subject>Comic</dc:subject>			<summary type="text/html" mode="escaped"><![CDATA[Play-Acting]]></summary>
			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/comic/2007/05/play-acting.html"><![CDATA[<img src="http://www.parryandcarney.com/strips/parry-and-carney20070515.gif" title="Play-Acting" alt="Play-Acting"/>]]></content>
				</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[No New Strip This Week]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/article/2007/02/no-new-strip-this-week.html" />
		<id>http://www.parryandcarney.com/archives/article/2007/02/no-new-strip-this-week.html</id>
		<modified>2007-02-13T10:22:28Z</modified>
		<issued>  2007-02-13T10:22:28Z</issued>
		
	<dc:subject>Article</dc:subject>			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/article/2007/02/no-new-strip-this-week.html"><![CDATA[<p>Sorry all&mdash;things are too busy right now.</p>
]]></content>
		</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Carnotaurinae]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/article/2007/02/carnotaurinae.html" />
		<id>http://www.parryandcarney.com/archives/article/2007/02/carnotaurinae.html</id>
		<modified>2007-02-06T00:01:18Z</modified>
		<issued>  2007-02-06T00:01:18Z</issued>
		
	<dc:subject>Article</dc:subject>			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/article/2007/02/carnotaurinae.html"><![CDATA[<p>Just what goes in <i>Carnotaurinae</i>? Find out next week!</p>

<p>(Assuming I have time &#8230; and you don&#8217;t already know&#8230;.)</p>
]]></content>
		</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Noble Subfamilia]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/comic/2007/02/noble-subfamilia.html" />
		<id>http://www.parryandcarney.com/archives/comic/2007/02/noble-subfamilia.html</id>
		<modified>2007-02-06T00:00:52Z</modified>
		<issued>  2007-02-06T00:00:52Z</issued>
		
	<dc:subject>Comic</dc:subject>			<summary type="text/html" mode="escaped"><![CDATA[Noble Subfamilia]]></summary>
			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/comic/2007/02/noble-subfamilia.html"><![CDATA[<img src="http://www.parryandcarney.com/strips/parry-and-carney20070206.gif" title="Noble Subfamilia" alt="Noble Subfamilia"/>]]></content>
				</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Just what is a turtle?]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/article/2007/01/just-what-is-a-turtle.html" />
		<id>http://www.parryandcarney.com/archives/article/2007/01/just-what-is-a-turtle.html</id>
		<modified>2007-01-30T00:01:41Z</modified>
		<issued>  2007-01-30T00:01:41Z</issued>
		
	<dc:subject>Article</dc:subject>			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/article/2007/01/just-what-is-a-turtle.html"><![CDATA[<p>
Turtles serve to demonstrate one of the quandaries of biological
nomenclature (naming of groups of life forms). Many of us were taught in school
(and may have forgetten) that Class Reptilia has four living orders, one of
them being Order Testudines (also called Chelonia, although that&#8217;s the name of
a sea turtle genus as well), which includes all turtles. What is a turtle?
Well, it&#8217;s self-evident: those reptile things with shells and beaks
and shoulder girdles positioned inside their ribs, etc. Everyone knows what a
turtle is. (Well, except for some Brits, who seem to think that terrapins and
tortoises are completely separate categories &#8230; but I digress.)
</p>

<p>
Well, it was not always so simple. Modern turtles have many traits in common,
but they could not all have arisen at once. Perhaps the beak was first, then
parts of the shell, then the migration of the shoulder girdle, then the rest of
the shell, etc. Which animals were turtles: the ones with just a beak, the ones
with part of a shell, or the ones with all of the shell? (What does this mean for the
Teenage Mutant Ninja Turtles, with their half-shells?) Or was the order of
traits different? (As noted in my
<a href="/archives/article/2006/11/turtles-are-tricky-2.html">last essay</a>,
the origins of turtles are not well-understood.) This kind of problem crops up
in a lot of places: where do you draw the line if a group is well-delineated
today, but was blurrier in the past? (Birds are another excellent and contentious example.)
</p>

<p>
It&#8217;s important to understand several types of groups in order to delve further
into the issue. In phylogenetic nomenclature, all named groups are <b>clades</b>
or species. (Arbitrary designations like &#8220;Order&#8221; and &#8220;Class&#8221; are
eschewed&mdash;and actually, it&#8217;s debated as to whether &#8220;Species&#8221; might be
arbitrary.) A clade is an ancestor plus all descendants. Examples of clades
include <i>Mammalia</i>, <i>Angiospermae</i> (flowering plants), and
<i>Dinosauria</i> (but only if birds are included). Groups that are not clades
include outdated taxa like &#8220;Pisces&#8221; (which includes the last common ancestor of fish but excludes
some of its descendants&mdash;namely, us tetrapods) and
&#8220;Pachydermata&#8221; (which includes several distantly related lineages of large,
thick-skinned mammal but does not include any of their common ancestors).
</p>

<p>
There are three relevant types of clade. A <b>crown group</b> includes
the last common ancestor of living organisms, plus all descendants of that
ancestor. A <b>total group</b> includes all organisms sharing more recent
ancestry with a crown group than with any living organisms not in the crown
group. As an example, <i>Mammalia</i> is often used as a crown group (the last
common ancestor of monotremes, marsupials, and placentals, plus all descendants
of that ancestor), while <i>Synapsida</i> is sometimes used as a total group,
including everything closer to mammals than to living reptiles (this includes
mammals as well as extinct relatives such as <i>Dimetrodon</i>, <i>Moschops</i>,
<i>Cynognathus</i>, etc.) Every crown group is included by a corresponding
total group. The total group consists of the crown group plus the
<b>stem group</b>, the extinct relatives of the crown group. The non-mammalian
synapsids may be referred to as &#8220;stem-mammals&#8221; (This is preferable to the older,
less accurate nickname, &#8220;mammal-like reptiles&#8221;.)
<big><pre>
--<i>Synapsida</i> (=<i>Pan-Mammalia</i>)
  |&#8211;<i>Dimetrodon</i>*
  `&#8211;+&#8211;<i>Moschops</i>*
     `&#8211;+&#8211;<i>Cynognathus</i>*
        `&#8211;<i>Mammalia</i> (crown group)
           |&#8211;<i>Monotremata</i> (platypuses, echidnas)
           `&#8211;<i>Theria</i> (marsupials, placentals)
* extinct stem-mammals
</pre></big>
</p>

<p>
Finally, an <b>apomorphy-based clade</b> is defined based on a derived
character (apomorphy). For example, <i>Avifilopluma</i> is defined as the
first pan-avian ancestor of <i>Vultur gryphus</i> (the Andean condor) to possess
feathers homologous with those of <i>V. gryphus</i>, plus all of that ancestor&#8217;s
descendants. Apomorphy-based definitions have some special
problems. In the case of <i>Avifilopluma</i>, it is not always possible to tell
whether a given fossil organism possessed feathers. We can say pretty confidently
that <i>Archaeopteryx</i>, <i>Caudipteryx</i>, <i>Dilong</i>,
<i>Sinosauropteryx</i>, etc. must belong, since they preserve feathers. We can also say confidently that
<i>Deinonychus</i>, <i>Ichthyornis</i>, <i>Oviraptor</i>, <i>Tyrannosaurus</i>,
etc. also belong, since, even though their fossils don&#8217;t preserve feathers,
other evidence shows that they descend from an ancestor that did (and probably
had feathers themselves). But for some fossil taxa, such as
<i>Proceratosaurus</i>, it&#8217;s not known whether the last common ancestor
with <i>V. gryphus</i> had feathers or not, so the group lies in a sort of
&#8220;avifilopluman limbo&#8221;.
<big><pre>
--<i>Pan-Aves</i> (=<i>Avemetatarsalia</i>)
  `&#8211;<i>Dinosauria</i>
     `&#8211;<i>Neotetanurae</i>
        |&#8211;<i>Allosaurus</i> (not feathered)
        `&#8211;?<i>Avifilopluma</i>
           |&#8211;<i>Proceratosaurus</i> (feathered? who knows?)
           `&#8211;?<i>Avifilopluma</i>
              |&#8211;<i>Sinosauropteryx</i> (feathered)
              |&#8211;+&#8211;<i>Dilong</i> (feathered)
              |  `&#8211;<i>Tyrannosaurus</i> (presumed feathered)
              `&#8211;+&#8211;+&#8211;<i>Caudipteryx</i> (feathered)
                 |  `&#8211;<i>Oviraptor</i> (presumed feathered)
                 `&#8211;+&#8211;<i>Archaeopteryx</i> (feathered)
                    |&#8211;<i>Deinonychus</i> (presumed feathered)
                    `&#8211;+&#8211;<i>Ichthyornis</i> (presumed feathered)
                       `&#8211;<i>Vultur</i> (feathered)
</pre></big>
</p>

<p>
(I seem to have gotten around to dinosaurs; back to turtles.)
</p>

<p>
One solution to the question of what to include in <i>Testudines</i> was proposed
by Joyce et al. (2004). They advocate limiting the term to the crown group, the
last common ancestor of living turtles, plus all of that ancestor&#8217;s descendants.
This general approach is preferred by some systematists, who argue that it prevents
researchers from making &#8220;unjustified inferences&#8221; (de Queiroz and Gauthier, 1992)
about extinct members of the stem group. For example, someone talking about
<i>Aves</i> (birds) might talk about soft-tissue or behavioral characters such as
warm-bloodedness, powered flight, patagia (skin flaps on the wing), etc. But it is not known
exactly when these traits arose, and many organisms commonly referred to as &#8220;avian&#8221;
may not have had them. (E.g., <i>Archaeopteryx</i> seems not to have had patagia,
may not have flown, and a few researchers don&#8217;t think it was warm-blooded, either.)
For this reason, these systematists feel that commonly-used clade names are best
attached to crown groups.
</p>

<p>
(Damn, dinosaurs, again! Must &#8230; get &#8230; back &#8230; to &#8230; turtles!)
</p>

<p>
This idea is a bit contentious for <i>Aves</i> (although I lean toward it, myself)
but works very well for <i>Testudines</i>, especially if (again following Joyce et al.) we use
a similar name, <i>Testudinata</i>, for an apomorphy-based clade based on the possession of a full turtle shell
(detailed in Joyce et al., 2004), and <i>Pantestudines</i> (or, as a new <a href="http://phylocode.org">PhyloCode</a> rule may have it, <i>Pan-Testudines</i>)
for the total group, including everything closer to modern turtles than
to lizards, tuataras, crocodylians, or birds. Thus, some fossil forms, such as
<i>Proganochelys</i> (which the turtle in the strip is based on) fall outside
<i>Testudines</i>, but are still within <i>Testudinata</i>. There must also be
pan-testudines which are not testudinates, but,
<a href="/archives/article/2006/11/turtles-are-tricky-2.html">as previously discussed</a>,
we are not too certain what they are. (Pareiasaurs? Procolophonids? Euryapsids? Something as-yet-undiscovered?)
<big><pre>
--<i>Pan-Testudines</i> (total group)
  |==shell-less stem-testudines
  `&#8211;<i>Testudinata</i> (apomorphy-based group)
     |==stem-testudines with shells, such as <i>Proganochelys</i>
     `&#8211;<i>Testudines</i> (crown group)
</pre></big>
</p>

<p>
Crown and total groups are increasingly important types of organism group in biological
systematics. Knowing the distinction is important whether studying stem-testudines like <i>Proganochelys</i>
or stem-avians like <i>Carnotaurus</i>.
</p>

<p><u>References</u>:<ul><li>de Queiroz, K. and J. A. Gauthier, 1992. Phylogenetic taxonomy. <i>Annual Review of Ecology and Systematics</i> 23:449&ndash;480.</li>
<li>Joyce, W.G., J. F. Parham, and J. A. Gauthier, 2004. Developing a protocol for the conversion of rank-based taxon names
to phylogenetically defined clade names, as exemplified by turtles. <i>Journal of Paleontology</i> 78(5):989&ndash;1013.</li></ul></p>
]]></content>
		</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Allergies]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/comic/2007/01/allergies.html" />
		<id>http://www.parryandcarney.com/archives/comic/2007/01/allergies.html</id>
		<modified>2007-01-30T00:00:41Z</modified>
		<issued>  2007-01-30T00:00:41Z</issued>
		
	<dc:subject>Comic</dc:subject>			<summary type="text/html" mode="escaped"><![CDATA[Allergies]]></summary>
			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/comic/2007/01/allergies.html"><![CDATA[<img src="http://www.parryandcarney.com/strips/parry-and-carney20070130.gif" title="Allergies" alt="Allergies"/>]]></content>
				</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Carnotaurus on Heroes!]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/article/2007/01/carnotaurus-on-heroes.html" />
		<id>http://www.parryandcarney.com/archives/article/2007/01/carnotaurus-on-heroes.html</id>
		<modified>2007-01-23T01:33:42Z</modified>
		<issued>  2007-01-23T01:33:42Z</issued>
		
	<dc:subject>Article</dc:subject>			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/article/2007/01/carnotaurus-on-heroes.html"><![CDATA[<p>I have to admit I&#8217;ve gotten a little addicted to the TV show <i>Heroes</i>. Nice to see everbody&#8217;s favorite hero, Hiro, face off against a <i>Carnotaurus</i> tonight (sort of).</p>

<p>Although he was supposed to be in the American Museum of Natural History, I&#8217;m pretty sure that was the Los Angeles Museum of Natural History (which also starred as a genetic research lab in <i>Spider-Man</i>) dressed up a bit.</p>
]]></content>
		</entry>
				<entry>
	  	<author>
			<name>Mike Keesey</name>
		</author>
		<title type="text/html" mode="escaped"><![CDATA[Whirling Chest Dervishes]]></title>
		<link rel="alternate" type="text/html" href="http://www.parryandcarney.com/archives/article/2007/01/whirling-chest-dervishes.html" />
		<id>http://www.parryandcarney.com/archives/article/2007/01/129.html</id>
		<modified>2007-01-23T00:02:41Z</modified>
		<issued>  2007-01-23T00:02:41Z</issued>
		
	<dc:subject>Article</dc:subject>			<content type="text/html" mode="escaped" xml:base="http://www.parryandcarney.com/archives/article/2007/01/whirling-chest-dervishes.html"><![CDATA[<p>(Sorry for last week, everyone. The &#8220;real&#8221; job, you know&#8230;.)</p>

<p>A study was recently done by Senter and Parrish (2006) on forelimb mobility in <i>Carnotaurus</i>. We all know the arms are ridiculously small, but what&#8217;s really interesting is their bizarre combination of flexibility and inflexibility. Most of the arm was all but locked into place: barely mobile digits, rigid wrists, and ulnae and radii so short that the forearm almost looks like two extra wrist bones, with the hand sprouting directly from a locked elbow. Yet the humeri still had a bit of length to them, and, what&#8217;s more, they each had a hemispherical head, meaning that the shoulder had a larger-than-average range of motion. (For a theropod, anyway&mdash;we primates still have them beat in that category.)</p>

<p>Basically, <i>Carnotaurus</i> arms were like two rigid little sticks with claws on the end poking out of the chest and capable of swiveling around quite a bit. (Sort of like a stripper&#8217;s nipple tassels&mdash;except for the claws.)</p>

<p>What possible purpose could this kind of arm serve? Senter and Parrish look to the phylogeny and note that hemispherical humeral heads occur in all (neo)ceratosaurs (except for <i>Ceratosaurus</i>), so the mobile shoulder seems to have developed before the rigidity (which is only know to occur in carnotaurines). They suggest apprehension of tall prey, grappling contests, or display (like the tassels!) as possible uses in the longer-armed ceratosaurs, while noting that it&#8217;s (currently) impossible to know with any certainty.</p>

<p>Once thing&#8217;s for sure, though&mdash;they are funny-looking.</p>

<p><u>Reference</u>:<ul><li>Senter, P. and J. M. Parrish. 2006 (Dec. 22). Forelimb function in <i>Carnotaurus sastrei</i>, and its behavioral implications. <i>PalaeoBios</i> 26(3):7&ndash;17.</li></ul></p>
]]></content>
		</entry>
		</feed>
