<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" media="screen" href="/~d/styles/atom10full.xsl"?><?xml-stylesheet type="text/css" media="screen" href="http://feeds.feedburner.com/~d/styles/itemcontent.css"?><feed xmlns="http://www.w3.org/2005/Atom" xmlns:openSearch="http://a9.com/-/spec/opensearch/1.1/" xmlns:blogger="http://schemas.google.com/blogger/2008" xmlns:georss="http://www.georss.org/georss" xmlns:gd="http://schemas.google.com/g/2005" xmlns:thr="http://purl.org/syndication/thread/1.0" xmlns:feedburner="http://rssnamespace.org/feedburner/ext/1.0" gd:etag="W/&quot;D04NR308eSp7ImA9WhBbGU4.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185</id><updated>2013-05-18T20:59:56.371-07:00</updated><category term="Homeopathy" /><category term="Bad Science in the Movies" /><category term="Living with Chemicals" /><category term="Book Review" /><category term="Logical Fallacies" /><category term="Saturday Links" /><category term="Bad Science" /><category term="Science in the News" /><category term="IgNobel Prize" /><category term="Higgs Boson" /><category term="TED Talk Tuesday" /><category term="Term of the Week" /><category term="Thoughts from my Dad" /><category term="30 Second Science" /><category term="Your Questions" /><category term="Forces of Attraction" /><category term="Lasers" /><category term="Video discussions" /><category term="Evolution" /><category term="Genetically Modified Foods" /><category term="Nobel Prize" /><category term="Philosophy of Science" /><category term="Guest Post" /><category term="Star Wars" /><category term="Your intuition is WRONG" /><category term="Science Myths and Misconceptions" /><category term="Collapsed Wavefunction" /><category term="Health" /><category term="Scientist in the Spotlight" /><title>The Collapsed Wavefunction</title><subtitle type="html" /><link rel="http://schemas.google.com/g/2005#feed" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/posts/default" /><link rel="alternate" type="text/html" href="http://www.thecollapsedwavefunction.com/" /><link rel="next" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default?start-index=26&amp;max-results=25&amp;redirect=false&amp;v=2" /><author><name>Chad Jones</name><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><generator version="7.00" uri="http://www.blogger.com">Blogger</generator><openSearch:totalResults>148</openSearch:totalResults><openSearch:startIndex>1</openSearch:startIndex><openSearch:itemsPerPage>25</openSearch:itemsPerPage><atom10:link xmlns:atom10="http://www.w3.org/2005/Atom" rel="self" type="application/atom+xml" href="http://feeds.feedburner.com/TheCollapsedWavefunction" /><feedburner:info uri="thecollapsedwavefunction" /><atom10:link xmlns:atom10="http://www.w3.org/2005/Atom" rel="hub" href="http://pubsubhubbub.appspot.com/" /><entry gd:etag="W/&quot;D04NR308fip7ImA9WhBbGU4.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-7080810607226728475</id><published>2013-05-18T20:54:00.001-07:00</published><updated>2013-05-18T20:59:56.376-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-18T20:59:56.376-07:00</app:edited><title>Mr. Clean's Magic Eraser and the chemical that's not a chemical</title><content type="html">Today on Reddit I saw&amp;nbsp;&lt;a href="http://www.reddit.com/r/todayilearned/comments/1ekmlc/til_magic_eraser_cleaning_products_do_not_use_any/" target="_blank"&gt;a post in &lt;i&gt;&lt;b&gt;Today I Learned&lt;/b&gt;&lt;/i&gt;&lt;/a&gt;&amp;nbsp;that claimed that:&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"Magic eraser cleaning products do not use any chemicals to clean hard-to-remove marks, but instead act as extremely fine sandpaper."&lt;/blockquote&gt;
&lt;b&gt;&lt;i&gt;Okay...&lt;/i&gt;&lt;/b&gt;&lt;br /&gt;
&lt;br /&gt;
There's the argument that every chemist wants to make right now, and many of you are screaming it at your screen already - &lt;b style="font-style: italic;"&gt;Everything is a chemcial&lt;/b&gt;&amp;nbsp;- but &lt;a href="http://www.thecollapsedwavefunction.com/2013/05/chemophobia.html" target="_blank"&gt;as I said during our recent discussion on chemophobia&lt;/a&gt;, that argument is weak and makes chemists sound like they're being dismissive of the actual concern. But this isn't a case of chemophobia. The claims states that magic eraser "does not use any chemicals", but in reality the chemical it does contain is the entire reason it's so cool.&lt;br /&gt;
&lt;br /&gt;
The Mr. Clean Magic Eraser is actually a&amp;nbsp; formaldehyde-melamine-sodium bisulfite copolymer, also called melamine foam. It's a very hard polymer, which is what makes it so good at it's cleaning job. Here's how melamine foam looks under a microscope:&lt;br /&gt;
&lt;br /&gt;
&lt;table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"&gt;&lt;tbody&gt;
&lt;tr&gt;&lt;td style="text-align: center;"&gt;&lt;img src="http://3.bp.blogspot.com/_hhaTg03kiU0/TAW70CJFWSI/AAAAAAAAK2c/Belqt7A1deY/s1600/Melamine.jpg" style="margin-left: auto; margin-right: auto;" /&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class="tr-caption" style="text-align: center;"&gt;Image from&amp;nbsp;&lt;a href="http://www.kitchenandresidentialdesign.com/2010/06/whats-in-magic-eraser.html" target="_blank"&gt;this blog post.&lt;/a&gt; Unknown original source.&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;br /&gt;
The claim that it works like sandpaper is entirely true. Since melamine is such a hard polymer it easily scratches off most stains. This is also why you don't want to use it on any glossy surfaces - you'll scrape off the gloss coating. If you've ever used melamine foam you've probably been amazed at how well it removes tough stains. Melamine foam &lt;i style="font-weight: bold;"&gt;is&lt;/i&gt;&amp;nbsp;a chemical, and it's&amp;nbsp;just one more way that chemistry makes your life better.&lt;br /&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;b&gt;&lt;u&gt;BONUS INTERESTING FACTS:&lt;/u&gt;&lt;/b&gt;&lt;/div&gt;
&lt;div&gt;
&lt;ul&gt;
&lt;li&gt;Proctor and Gamble filed a patent on marketing melamine foam. That's right - a patent on &lt;i style="font-weight: bold;"&gt;marketing &lt;/i&gt;the foam. Basically, the patent is take melamine foam (which was already a well known cleaning product), put Mr. Clean's face on a the front, and sell it to Americans. It's a very odd patent to read through, especially knowing that there's &lt;a href="http://www.google.com/patents/US20050009940" target="_blank"&gt;not a novel idea in the whole patent&lt;/a&gt;.&lt;/li&gt;
&lt;li&gt;If you love Magic Erasers, don't bother paying the &lt;a href="http://www.walmart.com/ip/19589655?wmlspartner=wlpa&amp;amp;adid=22222222227015536711&amp;amp;wl0=&amp;amp;wl1=g&amp;amp;wl2=&amp;amp;wl3=18154007710&amp;amp;wl4=&amp;amp;wl5=pla&amp;amp;veh=sem" target="_blank"&gt;high price&lt;/a&gt; to see Mr. Clean's face. Just&lt;a href="http://www.amazon.com/gp/product/B0091ARY2M/ref=s9_simh_se_p121_d0_i1?pf_rd_m=ATVPDKIKX0DER&amp;amp;pf_rd_s=auto-no-results-center-1&amp;amp;pf_rd_r=B3976AED9003433087F9&amp;amp;pf_rd_t=301&amp;amp;pf_rd_p=1263465782&amp;amp;pf_rd_i=formaldehyde-melamine-sodium%20bisulfate%20copolymer" target="_blank"&gt; buy&amp;nbsp;formaldehyde-melamine-sodium bisulfite copolymer foam in bulk.&lt;/a&gt;&amp;nbsp;Instead of paying $1.50 per scrubbing pad you can get them for about 29 cents each. You're welcome.&lt;/li&gt;
&lt;/ul&gt;
&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/eMst_zn1qHs" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/7080810607226728475/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/05/magic-eraser-and-chemical-thats-not.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7080810607226728475?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7080810607226728475?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/eMst_zn1qHs/magic-eraser-and-chemical-thats-not.html" title="Mr. Clean's Magic Eraser and the chemical that's not a chemical" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://3.bp.blogspot.com/_hhaTg03kiU0/TAW70CJFWSI/AAAAAAAAK2c/Belqt7A1deY/s72-c/Melamine.jpg" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/05/magic-eraser-and-chemical-thats-not.html</feedburner:origLink></entry><entry gd:etag="W/&quot;D08GSXc-fip7ImA9WhBbFks.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-502125364594231387</id><published>2013-05-15T16:16:00.000-07:00</published><updated>2013-05-15T17:57:08.956-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-15T17:57:08.956-07:00</app:edited><category scheme="http://www.blogger.com/atom/ns#" term="Video discussions" /><title>TCW Discussion series: How is science funded?</title><content type="html">Tonight, May 15th, at 6:30 MDT I'll be hosting another episode of The Collapsed Wavefunction&amp;nbsp;discussion&amp;nbsp;series. We'll be answering the question "How is science funded?"&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;Update, this discussion will now be held on May 22nd. &amp;nbsp;We were moments from starting when the fire alarm went off in the chemistry building. I'm currently waiting outside as the fire department investigates. Thanks for showing up, and sorry to my guests for the technical difficulties!&lt;/b&gt;&lt;br /&gt;
&lt;br /&gt;
Joining me is Andrew from &lt;i&gt;Behind NMR Lines&lt;/i&gt;, Chemjobber, Sam (resident devil's advocate), David Dearden (my research advisor), and Matt Asplund (a member of my PhD&amp;nbsp;committee).&lt;br /&gt;
&lt;br /&gt;
You can watch the streaming video right here, starting just after 6:30 MDT.&lt;br /&gt;
&lt;br /&gt;
If you have any thoughts please add them in the comment section or Tweet #TCWDiscuss.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Links related to the discussion&lt;/u&gt;&lt;/b&gt;:&lt;br /&gt;
&lt;br /&gt;
&lt;ul&gt;
&lt;li&gt;My original post about Lamar Smith's bill:&amp;nbsp;&lt;a href="http://www.thecollapsedwavefunction.com/2013/04/what-lamar-smith-doesnt-understand.html"&gt;http://www.thecollapsedwavefunction.com/2013/04/what-lamar-smith-doesnt-understand.html&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;A post by Phil Plait about Canada's new&amp;nbsp;approach&amp;nbsp;to research:&amp;nbsp;&lt;a href="http://www.slate.com/blogs/bad_astronomy/2013/05/13/canada_and_science_nrc_will_now_only_do_science_that_promotes_economic_gain.html?utm_source=tw&amp;amp;utm_medium=sm&amp;amp;utm_campaign=button_toolbar"&gt;http://www.slate.com/blogs/bad_astronomy/2013/05/13/canada_and_science_nrc_will_now_only_do_science_that_promotes_economic_gain.html?utm_source=tw&amp;amp;utm_medium=sm&amp;amp;utm_campaign=button_toolbar&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/wgVVbt1fgck" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/502125364594231387/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/05/how-is-science-funded.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/502125364594231387?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/502125364594231387?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/wgVVbt1fgck/how-is-science-funded.html" title="TCW Discussion series: How is science funded?" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/05/how-is-science-funded.html</feedburner:origLink></entry><entry gd:etag="W/&quot;C08NQnk6fyp7ImA9WhBbFkg.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-6325562812281449876</id><published>2013-05-15T14:04:00.001-07:00</published><updated>2013-05-15T14:04:53.717-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-15T14:04:53.717-07:00</app:edited><title>Malaria infection changes mosquito behavior</title><content type="html">Published today in PLOS one is an interesting article about how&amp;nbsp;&lt;a href="http://dx.plos.org/10.1371/journal.pone.0063602" target="_blank"&gt;malaria changes the behavior of infected&amp;nbsp;mosquitoes&lt;/a&gt;. The researchers showed that mosquitoes infected with malaria were more attracted to human odor than those that were not infected.&lt;br /&gt;
&lt;br /&gt;
The experimenters wore nylon socks to collect their foot odor (a clean nylon sock was used for a control). Then for a period of three minutes they counted how many mosquitoes&amp;nbsp;preferred&amp;nbsp;to land below the (stinky) nylon sock instead of the clean one. It wouldn't seem surprising to me that the mosquitoes&amp;nbsp;preferred to land by the smelly nylon sock - after all that sock smelled like food. What is interesting is that mosquitoes landed by the smelly nylon sock much more often &lt;i style="font-weight: bold;"&gt;after they were infected with malaria&lt;/i&gt;. The implications are obvious - malaria infected mosquitoes are more attracted to us than mosquitoes that aren't infected.&lt;br /&gt;
&lt;br /&gt;
&lt;table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"&gt;&lt;tbody&gt;
&lt;tr&gt;&lt;td style="text-align: center;"&gt;&lt;a href="http://1.bp.blogspot.com/-306BC4h3_4I/UZPfwGzn13I/AAAAAAAAcsA/eeBCru26DfU/s1600/Fig1.png" imageanchor="1" style="margin-left: auto; margin-right: auto;"&gt;&lt;img border="0" src="http://1.bp.blogspot.com/-306BC4h3_4I/UZPfwGzn13I/AAAAAAAAcsA/eeBCru26DfU/s1600/Fig1.png" /&gt;&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class="tr-caption" style="text-align: center;"&gt;Figure 1 in the mentioned article. Notice that infected mosquitoes land significantly more often than uninfected mosquitoes&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;br /&gt;
&lt;br /&gt;
Specifically, these researchers were looking at the&amp;nbsp;&lt;i&gt;Anopheles gambiae. &lt;/i&gt;&lt;a href="http://www.jstor.org/stable/50787" target="_blank"&gt;Past research&lt;/a&gt;&amp;nbsp;(which is cited incorrectly in the article)&amp;nbsp;has already shown that&amp;nbsp;&lt;i&gt;An. gambiae &lt;/i&gt;infected with malaria eat more frequently and for a longer time than those not infected. This study is another evidence that the malaria parasite is able to control the actions of it's host. The researchers point out the advantages of this mechanism - if an infected mosquito is attracted to a host the parasite can be transmitted more effectively.&lt;br /&gt;
&lt;br /&gt;
This isn't the first example of so-called "mind controlling" parasites.&amp;nbsp;&lt;i&gt;&lt;a href="http://en.wikipedia.org/wiki/Dicrocoelium_dendriticum" target="_blank"&gt;Dicrocoelium dendriticum&lt;/a&gt; &lt;/i&gt;is a parasite that affects the behavior of ants. Ants infected with&amp;nbsp;&lt;i&gt;Dicrocoelium dendriticum&lt;/i&gt;&amp;nbsp;will climb to the top of a blade of grass and wait in the hot sun to be eaten by grazing cattle - the next step in the parasite's life cycle. This current study does not &lt;i style="font-weight: bold;"&gt;prove&lt;/i&gt;&amp;nbsp;that malaria has this extent of mind control over the mosquitoes, but it is interesting that infection with malaria changes a mosquito's behavior in the favor of the parasite. The authors mention that more research is required, specifically they are now investigating the behavior as a function of the parasite's life cycle (will a mosquito be more attracted to human odor after the parasite reaches it's transmissible stage?) Current studies of malaria transmission often use uninfected mosquitoes or computer models based on behavior of uninfected mosquitoes, which may be&amp;nbsp;inadequate, given this new research.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;&amp;nbsp;



&lt;span style="float: left; padding: 5px;"&gt;&lt;a href="http://www.researchblogging.org/"&gt;&lt;img alt="ResearchBlogging.org" src="http://www.researchblogging.org/public/citation_icons/rb2_large_gray.png" style="border: 0;" /&gt;&lt;/a&gt;&lt;/span&gt;

&lt;span class="Z3988" title="ctx_ver=Z39.88-2004&amp;amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;amp;rft.jtitle=PLOS+ONE&amp;amp;rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.plos.org%2F10.1371%2Fjournal.pone.0063602&amp;amp;rfr_id=info%3Asid%2Fresearchblogging.org&amp;amp;rft.atitle=Malaria+Infected+Mosquitoes+Express+Enhanced%0D%0AAttraction+to+Human+Odor&amp;amp;rft.issn=&amp;amp;rft.date=2013&amp;amp;rft.volume=&amp;amp;rft.issue=&amp;amp;rft.spage=&amp;amp;rft.epage=&amp;amp;rft.artnum=http%3A%2F%2Fdx.plos.org%2F10.1371%2Fjournal.pone.0063602&amp;amp;rft.au=Renate+C.+Smallegange&amp;amp;rft.au=Geert-Jan+van+Gemert&amp;amp;rft.au=Marga+van+de+Vegte-Bolmer&amp;amp;rft.au=Salvador+Gezan&amp;amp;rft.au=Willem+Takken&amp;amp;rft.au=Robert+W.+Sauerwein&amp;amp;rft.au=James+G.+Logan&amp;amp;rfe_dat=bpr3.included=1;bpr3.tags=Biology%2CMedicine%2CHealth%2CBehavioral+Biology%2C+Evolutionary+Biology"&gt;Renate C. Smallegange, Geert-Jan van Gemert, Marga van de Vegte-Bolmer, Salvador Gezan, Willem Takken, Robert W. Sauerwein, &amp;amp; James G. Logan (2013). Malaria Infected Mosquitoes Express Enhanced
Attraction to Human Odor &lt;span style="font-style: italic;"&gt;PLOS ONE&lt;/span&gt; DOI: &lt;a href="http://dx.doi.org/http://dx.plos.org/10.1371/journal.pone.0063602" rev="review"&gt;http://dx.plos.org/10.1371/journal.pone.0063602&lt;/a&gt;&lt;/span&gt;&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/s5FokyT29Mg" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/6325562812281449876/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/05/malaria-infection-changes-mosquito.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/6325562812281449876?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/6325562812281449876?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/s5FokyT29Mg/malaria-infection-changes-mosquito.html" title="Malaria infection changes mosquito behavior" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://1.bp.blogspot.com/-306BC4h3_4I/UZPfwGzn13I/AAAAAAAAcsA/eeBCru26DfU/s72-c/Fig1.png" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/05/malaria-infection-changes-mosquito.html</feedburner:origLink></entry><entry gd:etag="W/&quot;C0MMR346fyp7ImA9WhBbFUQ.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-4229952461917092061</id><published>2013-05-14T21:16:00.000-07:00</published><updated>2013-05-14T21:18:06.017-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-14T21:18:06.017-07:00</app:edited><title>How to draw atomic orbitals</title><content type="html">&lt;div style="text-align: center;"&gt;
&lt;div style="text-align: left;"&gt;
I've been teaching general chemistry concepts for several years now. For some reason the idea of atomic orbitals is hard for students to grasp. Tonight I'm holding an exam review for my students and I thought I'd prepare by writing about the quantum numbers and how they affect the shape of atomic orbitals.&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;b&gt;&lt;u&gt;The Quantum Numbers&lt;/u&gt;&lt;/b&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;b&gt;&lt;u&gt;&lt;br /&gt;&lt;/u&gt;&lt;/b&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;i style="font-weight: bold;"&gt;n&lt;/i&gt;: The principal quantum number. &lt;i&gt;n&lt;/i&gt;&amp;nbsp;can be any positive integer (&lt;i&gt;1,2,3,4&lt;/i&gt;...)&lt;/div&gt;
&lt;div&gt;
&lt;div style="text-align: left;"&gt;
&lt;i style="font-weight: bold;"&gt;l&lt;/i&gt;: The angular momentum quantum number. &lt;i&gt;l&lt;/i&gt;&amp;nbsp;can equal: &lt;i&gt;0,1,2,3,4...(n-1)&lt;/i&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
When we write the angular quantum number we will often use the notation:&lt;/div&gt;
0 = s&lt;br /&gt;
1 = p&lt;br /&gt;
2 = d&lt;br /&gt;
3 = f&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;b&gt;&lt;i&gt;There are two other quantum numbers, but we aren't&amp;nbsp;concerned&amp;nbsp;with those for this exercise.&lt;/i&gt;&lt;/b&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Nodes&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
In quantum mechanics a node is a point where an electron cannot exist. The shape of any orbital is defined by the nodes. There are two types of nodes: angular and radial.&lt;br /&gt;
&lt;br /&gt;
&lt;i&gt;Angular&lt;/i&gt;: An atomic orbital will have &lt;i&gt;l &lt;/i&gt;angular nodes. So, an s-orbital has 0 a p-orbital has 1, and so on.&lt;br /&gt;
&lt;i&gt;Radial:&lt;/i&gt;&amp;nbsp;Each atomic orbital will have &lt;i&gt;n-l-1&lt;/i&gt;&amp;nbsp;radial nodes. So a 3p orbital has 3-1-1 = 1 radial node.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Drawing orbitals&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
Ok, so what you've read above is explained in just about every general chemistry textbook. But, when asked to draw orbitals most chemists just pull from memory. You don't need to do that, though. You don't have to memorize the shape of a single atomic orbital. You just need to know understand the quantum numbers. Let's start with 1s.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;1s&lt;/b&gt;&lt;br /&gt;
&lt;i&gt;Angular nodes&lt;/i&gt;: 0&lt;br /&gt;
&lt;i&gt;Radial nodes&lt;/i&gt;: 0&lt;br /&gt;
&lt;br /&gt;
This is the easiest. We'll always start with a circle. There are zero nodes and so we're already done. We'll say that 1s looks like this:&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://2.bp.blogspot.com/-SmBvFlCq5NM/UZL_2li4O_I/AAAAAAAAcpw/wFQZqkBYBqU/s1600/1s.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://2.bp.blogspot.com/-SmBvFlCq5NM/UZL_2li4O_I/AAAAAAAAcpw/wFQZqkBYBqU/s320/1s.png" width="314" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
And sure enough, the 1s orbital looks like we predicted. Here's the 1s orbital:&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://2.bp.blogspot.com/-PYM4MiHMiCc/UZL_2ozwB0I/AAAAAAAAcp0/0bwODJWVr04/s1600/1sR.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="315" src="http://2.bp.blogspot.com/-PYM4MiHMiCc/UZL_2ozwB0I/AAAAAAAAcp0/0bwODJWVr04/s320/1sR.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
But now let's move on.&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;b&gt;2s&lt;/b&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;i&gt;Angular nodes&lt;/i&gt;: 0&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;i&gt;Radial nodes&lt;/i&gt;: 1&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
We start again with a circle, but we draw one smaller circle within the larger circle.&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://2.bp.blogspot.com/-iqkc4q5yKwA/UZL_3zpf_0I/AAAAAAAAcqU/4x0oSqLRwtQ/s1600/2sA.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://2.bp.blogspot.com/-iqkc4q5yKwA/UZL_3zpf_0I/AAAAAAAAcqU/4x0oSqLRwtQ/s320/2sA.png" width="304" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
We erase everything in that node and this is now our prediction for what a 2s orbital will look like.&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://1.bp.blogspot.com/-jUnAsP6T0T0/UZL_3Q09GbI/AAAAAAAAcqM/KBxcXm1vKPY/s1600/2s.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://1.bp.blogspot.com/-jUnAsP6T0T0/UZL_3Q09GbI/AAAAAAAAcqM/KBxcXm1vKPY/s320/2s.png" width="304" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
And sure enough, our prediction is pretty close. Here's the real 2s orbital:&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://2.bp.blogspot.com/-IqoPh18NYQo/UZL_4BhgyGI/AAAAAAAAcqg/ONojAHK_Gp4/s1600/2sR.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="305" src="http://2.bp.blogspot.com/-IqoPh18NYQo/UZL_4BhgyGI/AAAAAAAAcqg/ONojAHK_Gp4/s320/2sR.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
Moving on...&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;2p&lt;/b&gt;&lt;br /&gt;
&lt;i&gt;Angular nodes&lt;/i&gt;: 1&lt;br /&gt;
&lt;i&gt;Radial nodes&lt;/i&gt;: 0&lt;br /&gt;
&lt;br /&gt;
We start with the same circle, but this time we need to add an angular node.&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://4.bp.blogspot.com/-hIOl0KvnnIE/UZL_3PvsSZI/AAAAAAAAcqI/CVEFyh-EP2E/s1600/2pA.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://4.bp.blogspot.com/-hIOl0KvnnIE/UZL_3PvsSZI/AAAAAAAAcqI/CVEFyh-EP2E/s320/2pA.png" width="304" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
When we erase that section we are left with our prediction for a 2p orbital...&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://3.bp.blogspot.com/-lz6iAChEX-A/UZL_2lXBFrI/AAAAAAAAcp4/6ii0VpwMCKs/s1600/2p.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://3.bp.blogspot.com/-lz6iAChEX-A/UZL_2lXBFrI/AAAAAAAAcp4/6ii0VpwMCKs/s320/2p.png" width="304" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
&amp;nbsp;Which, once you smooth the edges looks just like the actual 2p orbital:&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://4.bp.blogspot.com/-92QrXQtYMr4/UZL_3QUq_tI/AAAAAAAAcqE/LFJZYe9QRR4/s1600/2pR.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://4.bp.blogspot.com/-92QrXQtYMr4/UZL_3QUq_tI/AAAAAAAAcqE/LFJZYe9QRR4/s320/2pR.png" width="262" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
&amp;nbsp;Let's do the 3d orbital now&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;3d&lt;/b&gt;&lt;br /&gt;
&lt;i&gt;Angular nodes&lt;/i&gt;: 2&lt;br /&gt;
&lt;i&gt;Radial nodes&lt;/i&gt;: 0&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://1.bp.blogspot.com/-XgLeiAXTDYk/UZL_4OpdvcI/AAAAAAAAcqs/AKfIp9oo7IY/s1600/3dA.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="300" src="http://1.bp.blogspot.com/-XgLeiAXTDYk/UZL_4OpdvcI/AAAAAAAAcqs/AKfIp9oo7IY/s320/3dA.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
Following the same process we have marked two angles through the center of the circle. When we erase that area we're left with our prediction for a 3d orbital:&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://3.bp.blogspot.com/-x3eeZBfFVj8/UZL_4FCmCfI/AAAAAAAAcqk/4-d3v1k0wP8/s1600/3d.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="300" src="http://3.bp.blogspot.com/-x3eeZBfFVj8/UZL_4FCmCfI/AAAAAAAAcqk/4-d3v1k0wP8/s320/3d.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
Which, after we smooth out the edges, is a pretty good prediction:&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://2.bp.blogspot.com/-4rJoYheERl4/UZL_4XM6TgI/AAAAAAAAcq0/WTpgje9laXE/s1600/3dR.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="306" src="http://2.bp.blogspot.com/-4rJoYheERl4/UZL_4XM6TgI/AAAAAAAAcq0/WTpgje9laXE/s320/3dR.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
Let's do one more (because I'm not quite sick of this yet)&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;b&gt;3p&lt;/b&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;i&gt;Angular nodes&lt;/i&gt;: 1&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;i&gt;Radial nodes&lt;/i&gt;: 1&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
We start with an angular node...&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://3.bp.blogspot.com/-yVG0sdLSFxk/UZL_45brk9I/AAAAAAAAcrA/W6yi6ZaDdTc/s1600/3pA.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="300" src="http://3.bp.blogspot.com/-yVG0sdLSFxk/UZL_45brk9I/AAAAAAAAcrA/W6yi6ZaDdTc/s320/3pA.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
But, once we erase that are we're left we still have to include the radial node...&lt;/div&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://4.bp.blogspot.com/-A-rgoEGTqL0/UZL_47SdDII/AAAAAAAAcrI/HC0J4jcDgIY/s1600/3pB.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="300" src="http://4.bp.blogspot.com/-A-rgoEGTqL0/UZL_47SdDII/AAAAAAAAcrI/HC0J4jcDgIY/s320/3pB.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
So now let's just erase that area, and we'll be left with our prediction:&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://3.bp.blogspot.com/-90UQC74PHvA/UZL_4hC_KDI/AAAAAAAAcq8/jxjKV0Hx-9M/s1600/3p.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="300" src="http://3.bp.blogspot.com/-90UQC74PHvA/UZL_4hC_KDI/AAAAAAAAcq8/jxjKV0Hx-9M/s320/3p.png" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
Which again, once we smooth out the edges, looks pretty close to the actual 3p orbital:&lt;/div&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://4.bp.blogspot.com/-lfP3ierWYMM/UZL_5M4tCWI/AAAAAAAAcrM/ar8d6QX2W1E/s1600/3pR.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://4.bp.blogspot.com/-lfP3ierWYMM/UZL_5M4tCWI/AAAAAAAAcrM/ar8d6QX2W1E/s320/3pR.png" width="238" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;/div&gt;
&amp;nbsp;The great thing about drawing the atomic orbitals this way is you &lt;i style="font-weight: bold;"&gt;never&lt;/i&gt;&amp;nbsp;have to memorize any of these shapes - they come directly from understanding what the quantum numbers mean.&lt;br /&gt;
&lt;br /&gt;
Now, if you're one of my students, get back to studying.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Notes&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
&lt;br /&gt;
All of the "real" atomic orbitals from above were created using &lt;a href="http://www.orbitals.com/orb/ov.htm" target="_blank"&gt;Orbital Viewer&lt;/a&gt;, a very cool (and free) program.&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;/div&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/kAPrqs3rHmw" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/4229952461917092061/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/05/drawing-atomic-orbitals.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4229952461917092061?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4229952461917092061?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/kAPrqs3rHmw/drawing-atomic-orbitals.html" title="How to draw atomic orbitals" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://2.bp.blogspot.com/-SmBvFlCq5NM/UZL_2li4O_I/AAAAAAAAcpw/wFQZqkBYBqU/s72-c/1s.png" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/05/drawing-atomic-orbitals.html</feedburner:origLink></entry><entry gd:etag="W/&quot;Dk4MQXc-fCp7ImA9WhBbFEo.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-7989694434019552482</id><published>2013-05-13T12:56:00.001-07:00</published><updated>2013-05-13T12:56:20.954-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-13T12:56:20.954-07:00</app:edited><title>Commander Hadfield returns home a hero</title><content type="html">At approximately 10:30 ET tonight, Commander Hadfield will set foot on the earth for the first time in 146 days. In those 146 days Hadfield has grown an &lt;a href="https://twitter.com/Cmdr_Hadfield" target="_blank"&gt;extensive Twitter following&lt;/a&gt;, answered&amp;nbsp;&lt;a href="http://www.reddit.com/r/IAmA/comments/14schr/i_am_astronaut_chris_hadfield_commander_of/" target="_blank"&gt;questions&lt;/a&gt;&amp;nbsp;on &lt;a href="http://www.reddit.com/r/IAmA/comments/18pik4/i_am_astronaut_chris_hadfield_currently_orbiting/" target="_blank"&gt;Reddit&lt;/a&gt;, shared some &lt;a href="http://www.youtube.com/channel/UCtGG8ucQgEJPeUPhJZ4M4jA?feature=watch" target="_blank"&gt;amazing videos&lt;/a&gt;, posted &lt;a href="http://www.slate.com/blogs/bad_astronomy/2013/05/13/photo_gallery_astronaut_chris_hadfield_s_top_15_pictures_from_space.html" target="_blank"&gt;thousands of pictures&lt;/a&gt;, and now he's released this awesome cover of David Bowie's "Space Oddity":&lt;br /&gt;
&lt;div&gt;
&lt;br /&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;iframe allowfullscreen="" frameborder="0" height="315" src="http://www.youtube.com/embed/KaOC9danxNo" width="560"&gt;&lt;/iframe&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
For someone like me, that has been following Hadfield very closely, the video is pretty emotional. Hadfield's effort in science outreach is commendable and, perhaps, irreplaceable. I'm a chemist, but I can be honest with myself: Space is cool. Space increases the public's interest in science. It sparks discussion among lawmakers. Children and adults can appreciate how awesome space is, and it's great that Commander Hadfield saw his opportunity to make a difference and took it. His tweets, pictures, and videos have brought science to the public in a unique way.&amp;nbsp;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
In one of his final tweets from the ISS, Hadfield shared this picture:&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;img height="424" src="https://pbs.twimg.com/media/BKKlQW6CYAAmILu.jpg:large" width="640" /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
Along with the words&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"Spaceflight finale:  To some this may look like a sunset. But it's a new dawn."&lt;/blockquote&gt;
Which has powerful implications. Commander Hadfield is coming home, and we could look at that as the sunset on the pictures we've come to expect from the space station. A sunset on videos showing us what it looks like when &lt;a href="http://www.youtube.com/watch?v=4BbuOn--ERI" target="_blank"&gt;cry&lt;/a&gt; or &lt;a href="http://www.youtube.com/watch?v=lMtXfwk7PXg" target="_blank"&gt;wring out a washcloth&lt;/a&gt; in space. Or, we could look at it as a &lt;a href="https://www.youtube.com/watch?v=zSgiXGELjbc" target="_blank"&gt;new dawn.&lt;/a&gt; Commander Hadfield has injected new excitement into science outreach, a bolus of interest we can now build on.&lt;br /&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
So, Commander Hadfield, &lt;i style="font-weight: bold;"&gt;thank you!!&lt;/i&gt;&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/YzaNIayel5c" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/7989694434019552482/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/05/commander-hadfield-returns-home-hero.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7989694434019552482?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7989694434019552482?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/YzaNIayel5c/commander-hadfield-returns-home-hero.html" title="Commander Hadfield returns home a hero" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/KaOC9danxNo/default.jpg" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/05/commander-hadfield-returns-home-hero.html</feedburner:origLink></entry><entry gd:etag="W/&quot;CUEGRXo_fip7ImA9WhBbEkk.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-7161876075208493461</id><published>2013-05-10T20:40:00.001-07:00</published><updated>2013-05-10T20:40:24.446-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-10T20:40:24.446-07:00</app:edited><title>Living with Chemicals: Sodium lauryl sulfate</title><content type="html">&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;/div&gt;
&lt;div style="margin-left: 1em; margin-right: 1em;"&gt;
&lt;/div&gt;
&lt;b&gt;The Chemical (IUPAC): &lt;/b&gt;Sodium lauryl sulfate (SLS)&lt;br /&gt;
&lt;b&gt;You probably know it as:&lt;/b&gt;&amp;nbsp;Soap&lt;br /&gt;
&lt;b&gt;The structure:&lt;/b&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Sodium_laurylsulfonate_V.1.svg/300px-Sodium_laurylsulfonate_V.1.svg.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="55" src="http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Sodium_laurylsulfonate_V.1.svg/300px-Sodium_laurylsulfonate_V.1.svg.png" width="400" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
Ok, so it's actually an oversimplification to call this &lt;i style="font-weight: bold;"&gt;one&lt;/i&gt;&amp;nbsp;compound "soap", but this long chain molecule is an ingredient you'll probably find in just about every cleaning product you own. Soap, from a chemical perspective, is the product of a saponification reaction - a reaction between fat and a strong base (usually sodium hydroxide). The soap making scenes in &lt;i&gt;Fight Club&lt;/i&gt;, including the chemical burn,&amp;nbsp;are surprisingly accurate for movie science (though I wouldn't exactly recommend working with their starting materials).&lt;br /&gt;
&lt;br /&gt;
SLS is used as an engine degreaser, shampoo, floor cleaner, a&amp;nbsp;moderately effective&amp;nbsp;&lt;a href="http://link.springer.com/article/10.1023%2FA%3A1007612002903" target="_blank"&gt;shark&amp;nbsp;repellent&lt;/a&gt;,&amp;nbsp;and car wash soap. Believe it or not, it's also found in your toothpaste. You may not realize it, but your toothpaste is basically just a tastier, thicker version of your shampoo (I'll bet you didn't realize you were brushing your teeth with shampoo, did you). SLS is also the reason that orange juice tastes so horrible after you've brushed your teeth (probably because of it's surfactant properties).&lt;br /&gt;
&lt;br /&gt;
So the same chemical that is used as an engine degreaser can be used as a shark&amp;nbsp;repellent and is also found in your toothpaste. You'll often hear the argument that chemical &lt;b&gt;&lt;i&gt;X&lt;/i&gt;&lt;/b&gt; is bad for you because it is also used in product &lt;i style="font-weight: bold;"&gt;Y&lt;/i&gt;, but a&amp;nbsp;chemical isn't bad &lt;b style="font-style: italic;"&gt;because &lt;/b&gt;it's also found in a different product, even if that product would be bad for you. As another example, &lt;a href="http://en.wikipedia.org/wiki/Polysorbate" target="_blank"&gt;polysorbate 60&lt;/a&gt; is used in many processed foods as well as in sexual lubricants. It's an easy argument to say you shouldn't eat foods that contain polysorbate 60 because you're basically eating KY Jelly, but it's not a good argument. Chemicals can have a wide variety of applications - your toothpaste is proof of that.&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/bfRUmT3XYYM" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/7161876075208493461/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/05/living-with-chemicals-sodium-lauryl.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7161876075208493461?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7161876075208493461?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/bfRUmT3XYYM/living-with-chemicals-sodium-lauryl.html" title="Living with Chemicals: Sodium lauryl sulfate" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/05/living-with-chemicals-sodium-lauryl.html</feedburner:origLink></entry><entry gd:etag="W/&quot;Ak8DR30ycCp7ImA9WhBUFEg.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-603674048446276452</id><published>2013-05-01T08:34:00.000-07:00</published><updated>2013-05-01T18:41:16.398-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-01T18:41:16.398-07:00</app:edited><category scheme="http://www.blogger.com/atom/ns#" term="Video discussions" /><title>The Collapsed Wavefunction Discussion: Chemophobia</title><content type="html">Come join us for a discussion about chemophobia!&lt;br /&gt;
&lt;b&gt;&lt;u&gt;&lt;br /&gt;&lt;/u&gt;&lt;/b&gt;
&lt;b&gt;&lt;u&gt;The Panel:&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
Chad&lt;br /&gt;
Sam&lt;br /&gt;
Lauren&lt;br /&gt;
Dorea (from &lt;a href="http://chemicalsareyourfriends.com/"&gt;chemicalsareyourfriends.com&lt;/a&gt;)&lt;br /&gt;
N. Tesla (from&amp;nbsp;&lt;a href="http://kentuckychemistry.wordpress.com/"&gt;http://kentuckychemistry.wordpress.com&lt;/a&gt;)&lt;br /&gt;
&lt;br /&gt;
Wednesday, May 1st, 6:30 pm MDT (8:30 EST)&lt;br /&gt;
&lt;br /&gt;
&lt;iframe allowfullscreen="" frameborder="0" height="315" src="http://www.youtube.com/embed/wqPpGkby-1w" width="420"&gt;&lt;/iframe&gt;

&lt;br /&gt;
You can ask questions by commenting on this page or on Twitter using the hashtag #TCWDiscuss&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/5tYzqRW7yQ8" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/603674048446276452/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/05/chemophobia.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/603674048446276452?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/603674048446276452?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/5tYzqRW7yQ8/chemophobia.html" title="The Collapsed Wavefunction Discussion: Chemophobia" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/wqPpGkby-1w/default.jpg" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/05/chemophobia.html</feedburner:origLink></entry><entry gd:etag="W/&quot;DUUMSXg9eyp7ImA9WhBUEkQ.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-4888892925083895105</id><published>2013-04-29T14:48:00.000-07:00</published><updated>2013-04-29T21:48:08.663-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-29T21:48:08.663-07:00</app:edited><title>What Lamar Smith doesn't understand about research</title><content type="html">&lt;div&gt;
There's currently a bill circulating in Congress over funding requirements for the NSF. Lamar Smith (whose name sounds so&amp;nbsp;familiar, but I just can't remember when &lt;a href="http://www.thecollapsedwavefunction.com/2012/11/standing-on-my-soapbox-scientific.html" target="_blank"&gt;I've mentioned him before&lt;/a&gt;) wants to ensure that the tax payers are getting their money's worth when it comes to science. Derek Lowe, over at&amp;nbsp;&lt;i&gt;In The Pipeline&lt;/i&gt;&amp;nbsp;has &lt;a href="http://pipeline.corante.com/archives/2013/04/29/a_dumb_proposal_for_the_nsf.php" target="_blank"&gt;already written about this&lt;/a&gt; today...&lt;a href="http://pipeline.corante.com/archives/2013/04/29/just_work_on_the_winners.php" target="_blank"&gt;twice&lt;/a&gt;. This means, of course, that a much more competent and experienced blogger has already weighed in on this subject, but I'm going to add my thoughts anyways.&amp;nbsp;The bill requires that each funded project be:&lt;/div&gt;
&lt;blockquote class="tr_bq"&gt;
1) "…in the interests of the United States to advance the national health, prosperity, or welfare, and to secure the national defense by promoting the progress of science;&lt;br /&gt;
2) "… the finest quality, is groundbreaking, and answers questions or solves problems that are of utmost importance to society at large; and&lt;br /&gt;
3) "…not duplicative of other research projects being funded by the Foundation or other Federal science agencies."&lt;/blockquote&gt;
Which may seem pretty innocent. After all, it sounds reasonable that if tax payers are footing the bill for a project they should expect to directly benefit from their investment. Unfortunately, these new requirements probably won't lead to higher quality research being funded. The NSF already had a requirement that grants show &lt;b&gt;academic merit&lt;/b&gt;&amp;nbsp;and &lt;b&gt;broader impacts&lt;/b&gt;. New requirements will most likely just lead to scientists fluffing their proposals to ensure they meet the new requirements.&lt;br /&gt;
&lt;br /&gt;
I can only assume that this legislation is a reaction to what I lovingly call "&lt;a href="http://www.thedailybeast.com/articles/2013/03/25/yes-we-should-study-duck-penises.html" target="_blank"&gt;Duck-penis-gate&lt;/a&gt;", the controversy that began about a month ago when conservatives criticized the NSF for funding research into duck penises. Giving $400,000 to let someone study duck penises &lt;i&gt;sounds&lt;/i&gt; wasteful, but it's a necessary part of science.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Applied Research&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
Applied research asks the question: What practical uses are there for this? Applied research is important, and in most cases it's what the private sector does. Developing the newest iPhone advances our knowledge, but it's applied research. It seems to me that Lamar Smith sees all research as applied research. Either that, or he thinks that only applied research should be funded (I &lt;b&gt;&lt;i&gt;strongly&lt;/i&gt;&lt;/b&gt; disagree).&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Basic Research&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
Basic research asks a much broader question than applied research. Instead of developing a single application researchers are simply extending the base of our knowledge. Things like duck-penis-gate are basic research. There are fundamental questions about the nature of the universe that can &lt;i style="font-weight: bold;"&gt;only&lt;/i&gt;&amp;nbsp;be answered by basic research.&lt;br /&gt;
&lt;br /&gt;
The point is, we don't know what research is going to lead to major advances. To quote Derek Lowe, we can't just "work on the good stuff" because, frankly, we don't know what will end up being the good stuff. If we already knew where to look to find interesting science we wouldn't be doing research at all. There's a quote by Isaac Asimov that sums up the importance of basic research nicely:&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"The most exciting phrase to hear in science, the one that heralds new discoveries, is not Eureka! (I found it!) but rather, 'hmm... that's funny...'"&lt;/blockquote&gt;
Basic research can't promise to "[solve] problems that are of utmost importance to society at large" because we don't know what any one line of research will (or won't) bring us the next major discovery.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;span style="font-size: large;"&gt;&lt;u style="font-style: italic; font-weight: bold;"&gt;Edit&lt;/u&gt;:&lt;/span&gt;&lt;br /&gt;
After writing this I found this statement by&amp;nbsp;&lt;a href="http://blogs.nature.com/news/2013/04/obama-calls-for-peer-review-autonomy.html" target="_blank"&gt;President Obama&lt;/a&gt;:&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"In order for us to maintain our edge, we’ve got to protect our rigorous peer review system"&lt;/blockquote&gt;
It's good to see that the President understands that the question of what research is "important" should be decided by a process of scientific review, not a political review.&lt;br /&gt;
&lt;br /&gt;
&lt;span style="font-size: large;"&gt;&lt;u style="font-style: italic; font-weight: bold;"&gt;Edit #2&lt;/u&gt;:&lt;/span&gt;&lt;br /&gt;
On Reddit I came across the following question: &lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"Someone explain to me why getting rid of expensive government research grants in favor of privatization is a bad thing."&lt;/blockquote&gt;
Which I think is a legitimate question (though a very unpopular one, based on the number of downvotes received). Here's the answer I gave:&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"Private companies are great at applied research, but lousy at basic research. &amp;nbsp;&lt;/blockquote&gt;
&lt;blockquote class="tr_bq"&gt;
Applied research seeks to develop technology and other applications based around known science. &amp;nbsp;&lt;/blockquote&gt;
&lt;blockquote class="tr_bq"&gt;
Basic research seeks to push the limits of our understanding, but results are often more difficult or slower to get. That's because at the edge of our understanding we don't know what we don't know so we can't say what research will yield the "good" results. Private companies are not likely to invest in something without a direct, immediate, monetary gain available. However, humanity benefits when basic research is done. Therefore it &lt;i&gt;should&lt;/i&gt; be done."&lt;/blockquote&gt;
&lt;br /&gt;&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/fLhTTlAK65Q" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/4888892925083895105/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/what-lamar-smith-doesnt-understand.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4888892925083895105?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4888892925083895105?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/fLhTTlAK65Q/what-lamar-smith-doesnt-understand.html" title="What Lamar Smith doesn't understand about research" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/what-lamar-smith-doesnt-understand.html</feedburner:origLink></entry><entry gd:etag="W/&quot;CUAHR34zeSp7ImA9WhBUEUo.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-839229824209185500</id><published>2013-04-28T11:25:00.000-07:00</published><updated>2013-04-28T11:28:56.081-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-28T11:28:56.081-07:00</app:edited><title>Reflections on #RealTimeChem week</title><content type="html">This past week has been #RealTimeChem week on Twitter. I've really been blown away by how many amazing science bloggers are out there. I suppose I should be intimidated by them. After all, aren't they taking up part of my "market share"? If I really want people to read, share, and talk about my blog aren't they just competition?&lt;br /&gt;
&lt;br /&gt;
The truth is, I'm not intimidated. Just the opposite. This past week I've felt like part of the community (&lt;a href="https://dl.dropboxusercontent.com/u/616889/%2523realtimechem/%2523RealTimeChem.MAX_ID=328156631705743362.png" target="_blank"&gt;here's a visual representation of that community &lt;/a&gt;via &lt;a href="https://twitter.com/markborkum" target="_blank"&gt;@markborkum&lt;/a&gt;). And it's been a great week with lots of interesting chemistry to read about. For example:&lt;br /&gt;
&lt;ul&gt;
&lt;li&gt;Andrew at &lt;i&gt;Behind NMR Lines&lt;/i&gt; brought us a different &lt;a href="http://behindnmrlines.blogspot.co.uk/2013/04/chemistry-classics-prebiotic-chemistry.html" target="_blank"&gt;"classic" journal article&lt;/a&gt; every day, which I thought was a very cool contribution.&lt;/li&gt;
&lt;li&gt;Joaquin had some really cool input from the &lt;a href="http://joaquinbarroso.com/2013/04/24/realtimechem-day-3/" target="_blank"&gt;computational side of chemistry&lt;/a&gt;.&lt;/li&gt;
&lt;li&gt;While I gave a &lt;a href="http://www.thecollapsedwavefunction.com/2013/04/lab-tour-realtimechemcarnival.html" target="_blank"&gt;basic tour of my la&lt;/a&gt;b, Kat gave us a &lt;a href="http://115.146.85.229/day-3-of-realtimechem-week/" target="_blank"&gt;play by play of her entire day&lt;/a&gt; (which sounded exhausting to me. It made me realize how much I actually sit at a desk).&lt;/li&gt;
&lt;li&gt;&lt;a href="https://twitter.com/andy_nortcliffe" target="_blank"&gt;@andy_nortcliffe&lt;/a&gt; told us some of &lt;a href="http://theorganicsolution.wordpress.com/2013/04/25/realtimechemcarnival-guest-post/" target="_blank"&gt;his favorite chemicals&lt;/a&gt;.&lt;/li&gt;
&lt;li&gt;@azmanam challenged us to a game of &lt;a href="https://twitter.com/azmanam/status/327786400680402944/photo/1" target="_blank"&gt;chemistry sudoku&lt;/a&gt;.&lt;/li&gt;
&lt;li&gt;&lt;a href="https://twitter.com/V_Saggiomo" target="_blank"&gt;@V_Saggiomo&lt;/a&gt; gave us a test tube version of the Mario Bros theme song.&lt;/li&gt;
&lt;/ul&gt;
&lt;div&gt;
&lt;iframe allowfullscreen="" frameborder="0" height="360" src="https://www.youtube.com/embed/mxi3z2vDV_0?feature=player_detailpage" width="640"&gt;&lt;/iframe&gt;
&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;ul&gt;
&lt;li&gt;There was a bit of a compound drawing war on Twitter (see Jess the chemist's post about it &lt;a href="http://theorganicsolution.wordpress.com/2013/04/26/realtimechem-carnival-friday-musings/" target="_blank"&gt;here&lt;/a&gt;). See Ar Oh decided to &lt;a href="http://justlikecooking.blogspot.com/2013/04/throwing-down-for-realtimechem-week.html" target="_blank"&gt;show up at the end to win it all&lt;/a&gt; (though looking the structure up may have disqualified him...)&lt;/li&gt;
&lt;li&gt;&lt;a href="http://attheinterface.wordpress.com/2013/04/25/my-most-elegant-chemistry-result/" target="_blank"&gt;&lt;i&gt;At The Interface&lt;/i&gt;&lt;/a&gt; told us about his favorite result from the lab.&lt;/li&gt;
&lt;li&gt;&lt;i&gt;Chemically Cultured&lt;/i&gt; brought us a &lt;a href="http://chemicallycultured.blogspot.co.uk/2013/04/chemical-poetry.html" target="_blank"&gt;great poem about ITC&lt;/a&gt;.&lt;/li&gt;
&lt;li&gt;Marc Leger, from&lt;i&gt; Atoms and Numbers&lt;/i&gt; gave a good &lt;a href="http://www.atomsandnumbers.com/2013/numbers-of-atoms-excelling-with-chromatographic-columns/" target="_blank"&gt;review/introduction to HPLC&lt;/a&gt;.&lt;/li&gt;
&lt;li&gt;&lt;i&gt;&lt;a href="http://chemicalsareyourfriends.com/sliders/make-chromatography-flowers-and-bath-fizzies-at-the-eaton-centre-indigo-today/" target="_blank"&gt;Chemicals are your friends&lt;/a&gt; &lt;/i&gt;did "chromatography flowers" - a great community outreach idea!&lt;/li&gt;
&lt;li&gt;And of course who didn't love See Ar Oh's #ChemMovieCarnival (&lt;a href="http://justlikecooking.blogspot.com/2013/04/chemmoviecarnival-aaaand-action.html" target="_blank"&gt;Part 1&lt;/a&gt;, &lt;a href="http://justlikecooking.blogspot.com/2013/04/chemmoviecarnival-take-two.html" target="_blank"&gt;Part 2&lt;/a&gt; and&lt;a href="http://justlikecooking.blogspot.com/2013/04/chemmoviecarnival-act-three.html" target="_blank"&gt; Part 3&lt;/a&gt;). I always love reading/writing about bad science in the movies and on TV, so&lt;b&gt;&lt;i&gt; 23 &lt;/i&gt;&lt;/b&gt;posts about good/bad chemistry in the movies was awesome. Thank you for organizing it, See Ar Oh!&lt;/li&gt;
&lt;/ul&gt;
&lt;div&gt;
Thank you to everyone that participated. You made it a great week for me. If I didn't mention your post it's not because I didn't read it and it's not because I didn't like it. There was just too much to keep up with!&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/KSao-16CTiY" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/839229824209185500/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/reflections-on-realtimechem-week.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/839229824209185500?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/839229824209185500?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/KSao-16CTiY/reflections-on-realtimechem-week.html" title="Reflections on #RealTimeChem week" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/mxi3z2vDV_0/default.jpg" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/reflections-on-realtimechem-week.html</feedburner:origLink></entry><entry gd:etag="W/&quot;CUEEQ3w5fip7ImA9WhBVGEk.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-712553907903799333</id><published>2013-04-24T15:31:00.000-07:00</published><updated>2013-04-24T15:46:42.226-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-24T15:46:42.226-07:00</app:edited><title>The sinc(x) function (as seen on IFLS)</title><content type="html">Last Thursday, this image was posted on the Facebook page "I F***ing Love Science".&lt;br /&gt;
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&lt;div style="text-align: center;"&gt;
&lt;img alt="Photo: This is how mathematicians do arts and crafts.

Via: andiejulie on Imgur" src="https://sphotos-a.xx.fbcdn.net/hphotos-prn1/p480x480/540638_582072755147073_1346055960_n.jpg" /&gt;&lt;/div&gt;
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I immediately recognized it as the sinc function. It's a function that is extremely important in digital signal processing, and one that I see just about every day I'm in the lab. The sinc function is defined as:&lt;/div&gt;
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&lt;img alt="{\rm{sinc}}(r) = \frac{{\sin (r)}}{r}" class="ee_img tr_noresize" eeimg="1" longdesc="http://docs.google.com/MathType!MTEF!2!1!+-feaagKart1ev2aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLnhiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-xfr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaGcbaGaae4CaiaabMgacaqGUbGaae4yaiaacIcacaWGYbGaaiykaiabg2da9maalaaabaGaci4CaiaacMgacaGGUbGaaiikaiaadkhacaGGPaaabaGaamOCaaaaaaa!4334!" src="http://chart.apis.google.com/chart?cht=tx&amp;amp;chs=1x0&amp;amp;chf=bg,s,FFFFFF00&amp;amp;chco=000000&amp;amp;chl=%7B%5Crm%7Bsinc%7D%7D%28r%29%20%3D%20%5Cfrac%7B%7B%5Csin%20%28r%29%7D%7D%7Br%7D" style="vertical-align: middle;" /&gt;
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In the case of the picture above, &lt;i&gt;r&lt;/i&gt;&amp;nbsp;is equal to:&lt;/div&gt;
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&lt;img alt="r = \sqrt {{x^2} + {y^2} + {z^2}} " class="ee_img tr_noresize" eeimg="1" longdesc="http://docs.google.com/MathType!MTEF!2!1!+-feaagKart1ev2aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLnhiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-xfr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaGcbaGaamOCaiabg2da9maakaaabaGaamiEamaaCaaaleqabaGaaGOmaaaakiabgUcaRiaadMhadaahaaWcbeqaaiaaikdaaaGccqGHRaWkcaWG6bWaaWbaaSqabeaacaaIYaaaaaqabaaaaa!3F90!" src="http://chart.apis.google.com/chart?cht=tx&amp;amp;chs=1x0&amp;amp;chf=bg,s,FFFFFF00&amp;amp;chco=000000&amp;amp;chl=r%20%3D%20%5Csqrt%20%7B%7Bx%5E2%7D%20%2B%20%7By%5E2%7D%20%2B%20%7Bz%5E2%7D%7D%20" style="vertical-align: middle;" /&gt;
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and therefore, sinc(&lt;i&gt;r&lt;/i&gt;) is equal to:&lt;/div&gt;
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&lt;img alt="{\rm{sinc(}}r) = \frac{{\sin \left( {\sqrt {{x^2} + {y^2} + {z^2}} } \right)}}{{\sqrt {{x^2} + {y^2} + {z^2}} }}" class="ee_img tr_noresize" eeimg="1" longdesc="http://docs.google.com/MathType!MTEF!2!1!+-feaagKart1ev2aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLnhiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-xfr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaGcbaGaae4CaiaabMgacaqGUbGaae4yaiaabIcacaWGYbGaaiykaiabg2da9maalaaabaGaci4CaiaacMgacaGGUbWaaeWaaeaadaGcaaqaaiaadIhadaahaaWcbeqaaiaaikdaaaGccqGHRaWkcaWG5bWaaWbaaSqabeaacaaIYaaaaOGaey4kaSIaamOEamaaCaaaleqabaGaaGOmaaaaaeqaaaGccaGLOaGaayzkaaaabaWaaOaaaeaacaWG4bWaaWbaaSqabeaacaaIYaaaaOGaey4kaSIaamyEamaaCaaaleqabaGaaGOmaaaakiabgUcaRiaadQhadaahaaWcbeqaaiaaikdaaaaabeaaaaaaaa!50B9!" src="http://chart.apis.google.com/chart?cht=tx&amp;amp;chs=1x0&amp;amp;chf=bg,s,FFFFFF00&amp;amp;chco=000000&amp;amp;chl=%7B%5Crm%7Bsinc%28%7D%7Dr%29%20%3D%20%5Cfrac%7B%7B%5Csin%20%5Cleft%28%20%7B%5Csqrt%20%7B%7Bx%5E2%7D%20%2B%20%7By%5E2%7D%20%2B%20%7Bz%5E2%7D%7D%20%7D%20%5Cright%29%7D%7D%7B%7B%5Csqrt%20%7B%7Bx%5E2%7D%20%2B%20%7By%5E2%7D%20%2B%20%7Bz%5E2%7D%7D%20%7D%7D" style="vertical-align: middle;" /&gt;
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This is the partially obscured equation that you see in the picture. I noticed there was a bit of confusion about this equation in the comment section of IFLS, so I thought I'd clear a few things up.&lt;/div&gt;
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Many people assumed that the formula written on the front is incorrect. They noticed that plotting a function with &lt;i&gt;x&lt;/i&gt;, &lt;i&gt;y&lt;/i&gt;, and &lt;i&gt;z&lt;/i&gt;&amp;nbsp;variables would require a 4-dimensions. While that is true, it doesn't mean that the function is incorrect as written. The function is still correct&lt;b&gt; &lt;i&gt;as long as&lt;/i&gt;&lt;/b&gt;&amp;nbsp;the &lt;i&gt;z&lt;/i&gt;&amp;nbsp;is defined as a variable that is not connected to the cartesian (&lt;i&gt;x&lt;/i&gt;,&lt;i&gt;y&lt;/i&gt;,&lt;i&gt;z&lt;/i&gt;) coordinate system. In other words, &lt;i&gt;z&lt;/i&gt;&amp;nbsp;could be a time dependent variable or even a constant.&amp;nbsp;When &lt;i&gt;z &lt;/i&gt;= 0, the plot will look like this:&lt;/div&gt;
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&lt;img src="https://sphotos-a.xx.fbcdn.net/hphotos-ash3/522062_533957629977082_1940664122_n.png" /&gt;&lt;/div&gt;
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Which looks like the plot from the picture on IFLS. When we let &lt;i&gt;z&lt;/i&gt;&amp;nbsp;vary between 1 and 100 you can get a time dependent plot that looks like this:&lt;/div&gt;
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&lt;iframe allowfullscreen="" frameborder="0" height="360" src="http://www.youtube.com/embed/u0aiITWlTKM?feature=player_detailpage" width="640"&gt;&lt;/iframe&gt;&lt;/div&gt;
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This is a good example of why it's important to define your variables&lt;i&gt;. &lt;/i&gt;If you don't define your variables they could mean anything. A variable can &lt;i style="font-weight: bold;"&gt;look&lt;/i&gt;&amp;nbsp;familiar and mean something completely different. In this case, &lt;i&gt;z&lt;/i&gt;&amp;nbsp;is not the Cartesian coordinate &lt;i&gt;z &lt;/i&gt;that you're used to seeing. Remember, a variable means nothing until you've defined it.&amp;nbsp;&lt;i&gt;c&lt;/i&gt;&amp;nbsp;does not always mean the speed of light, &lt;i&gt;r&lt;/i&gt;&amp;nbsp;does not always mean radius, and so on.&amp;nbsp;&lt;/div&gt;
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&lt;span style="font-size: x-large;"&gt;&lt;b&gt;Now to the fun part!&lt;/b&gt;&lt;/span&gt;&amp;nbsp;&lt;/div&gt;
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I used matlab to make a printable version of this craft. I suggest you print these pictures out on cardstock or the paper will droop down. Print each of the pictures (in order) and have fun putting them together!&amp;nbsp;&lt;/div&gt;
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&lt;b&gt;&lt;i&gt;&lt;span style="font-size: large;"&gt;Send me a picture of your finished product&lt;/span&gt;&lt;/i&gt;&lt;/b&gt; and I'll post it for everyone to see.&lt;/div&gt;
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(If I get at least 5 submitted pictures I'll post pictures of the sad attempt that my 6 year old and I made)&lt;/div&gt;
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&lt;span style="font-size: x-large;"&gt;Aaaaaannnnnnd GO!&lt;/span&gt;&lt;/div&gt;
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This final picture is a possible "base" &amp;nbsp;for your plot. It's only half done (there should be blue lines along the entire axis). Cut two or three of these out and space them equal apart. Each tic mark along the &lt;i&gt;x&lt;/i&gt;&amp;nbsp;axis is where you should cut to place the cross sections you already cut out. This way the sinc(&lt;i&gt;r&lt;/i&gt;) wave will be equally spaced in both directions (if you don't use this you could get an oval instead of a circle).&lt;br /&gt;
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&lt;br /&gt;&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/jE8jNQ0zjJ0" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/712553907903799333/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/the-sincx-function-as-seen-on-ifls.html#comment-form" title="2 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/712553907903799333?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/712553907903799333?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/jE8jNQ0zjJ0/the-sincx-function-as-seen-on-ifls.html" title="The sinc(x) function (as seen on IFLS)" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/u0aiITWlTKM/default.jpg" height="72" width="72" /><thr:total>2</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/the-sincx-function-as-seen-on-ifls.html</feedburner:origLink></entry><entry gd:etag="W/&quot;C0IBRns_cCp7ImA9WhBVF0g.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-8314255395794399472</id><published>2013-04-23T14:09:00.003-07:00</published><updated>2013-04-23T14:12:37.548-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-23T14:12:37.548-07:00</app:edited><title>Lab Tour (#RealTimeChemCarnival)</title><content type="html">Since this week is #RealTimeChem week on Twitter, I thought I'd give a peak (get it, since this is a mass spec lab?)&amp;nbsp;into my lab.&lt;br /&gt;
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This is how I started my day off:&lt;br /&gt;
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Dilution: the only wet lab technique I have used in the last three years...&lt;/div&gt;
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Again, not a whole lot of chemistry going on here. Just dilutions...&lt;br /&gt;
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&lt;a href="http://2.bp.blogspot.com/-eTZDlaalPXk/UXbUQKXJeJI/AAAAAAAAbu8/KQ6myGT5oaQ/s1600/IMG_20130423_093626.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="300" src="http://2.bp.blogspot.com/-eTZDlaalPXk/UXbUQKXJeJI/AAAAAAAAbu8/KQ6myGT5oaQ/s400/IMG_20130423_093626.jpg" width="400" /&gt;&lt;/a&gt;&lt;/div&gt;
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This is our electrospray source. Ions are formed here before being guided into the cell (pictured from above).&lt;br /&gt;
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The belly of our instrument. In total we have 2 turbo pumps, 2 turbo/drag pumps, and 6 mechanical pumps.&lt;/div&gt;
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&amp;nbsp;This is &lt;i style="font-weight: bold;"&gt;my&lt;/i&gt;&amp;nbsp;magnet (yes, I am that possessive). This is a 4.7 T Fourier transform ion cyclotron&amp;nbsp;resonance mass spectrometer (My mass spec &amp;gt; your mass spec).&lt;br /&gt;
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&lt;a href="http://4.bp.blogspot.com/-EY1ZGzvBWuA/UXbUNRMD2OI/AAAAAAAAbug/nDggn0lOhP4/s1600/IMG_20130423_093525.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="300" src="http://4.bp.blogspot.com/-EY1ZGzvBWuA/UXbUNRMD2OI/AAAAAAAAbug/nDggn0lOhP4/s400/IMG_20130423_093525.jpg" width="400" /&gt;&lt;/a&gt;&lt;/div&gt;
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First signal of the day. Hello little ions, it's good to see you again.&lt;br /&gt;
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Command center: Mid-experiment&lt;br /&gt;
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So that's what my lab looks like (at least the functional parts of it). I'll be doing another post later this week to explain how my mass spec works and why it's awesome.&amp;nbsp;&lt;/div&gt;
&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/n3R99I0zif8" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/8314255395794399472/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/lab-tour-realtimechemcarnival.html#comment-form" title="2 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/8314255395794399472?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/8314255395794399472?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/n3R99I0zif8/lab-tour-realtimechemcarnival.html" title="Lab Tour (#RealTimeChemCarnival)" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://4.bp.blogspot.com/-m_-_DHy9ctY/UXaXcK_jNkI/AAAAAAAAbt4/_F45jOQIBIo/s72-c/dilution.jpg" height="72" width="72" /><thr:total>2</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/lab-tour-realtimechemcarnival.html</feedburner:origLink></entry><entry gd:etag="W/&quot;CEQGQXc6eyp7ImA9WhBVFks.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-7839602753569502586</id><published>2013-04-22T13:25:00.001-07:00</published><updated>2013-04-22T13:25:20.913-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-22T13:25:20.913-07:00</app:edited><title>Living with chemicals: Cucurbituril</title><content type="html">It's #RealTimeChem Week, so I thought I'd start it off with another "Living with chemicals" post. Usually with these posts I try to highlight a chemical that is very common; something that is a major part of our day to day life. This time, however, I'm going to be talking about a chemical that's part of &lt;i style="font-weight: bold;"&gt;my&lt;/i&gt;&amp;nbsp;everyday life. It's the compound I spend most of my time in the lab studying.&lt;br /&gt;
&lt;b&gt;&lt;br /&gt;&lt;/b&gt;
&lt;b&gt;The Chemical: &lt;/b&gt;Cucurbit[n]uril&lt;br /&gt;
&lt;b&gt;Systematic name:&amp;nbsp;&lt;/b&gt;&lt;span style="background-color: white; font-family: sans-serif; font-size: 13px; line-height: 19.1875px;"&gt;Dodecahydro-1H, 4H, 14H, 17H-2, 16:3, 15-dimethano-5H, 6H, 7H, 8H, 9H, 10H, 11H, 12H, 13H, 18H, 19H,20H, 21H, 22H, 23H, 24H, 25H, 26H-2, 3, 4a, 5a, 6a, 7a, 8a, 9a, 10a, 11a, 12a, 13a, 15, 16, 17a, 18a, 19a, 20a, 21a, 22a, 23a, 24a, 25a, 26a-tetracosaazabispentaleno[1’’’, 6’’’:5’’, 6’’, 7’’]cycloocty[1’’, 2’’, 3’’:3’,4’]pentaleno (1’, 6’:5, 6, 7) -cycloocta (1, 2, 3-gh:1’, 2’, 3’-g’h’) cycloocta (1, 2, 3-cd:5, 6, 7-c’d’) dipentalene-1, 4,6, 8, 10, 12, 14, 17, 19, 21, 23, 25-dodecone&lt;/span&gt;&lt;br /&gt;
&lt;div&gt;
&lt;b&gt;You probably know it as:&lt;/b&gt;&amp;nbsp;Well...you probably don't know it.&lt;/div&gt;
&lt;div&gt;
&lt;b&gt;The structure:&lt;/b&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://2.bp.blogspot.com/-y2eUuYg7Vlk/UTtxKv7hBOI/AAAAAAAAbhM/ffZHZeA0CDM/s1600/cb.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" src="http://2.bp.blogspot.com/-y2eUuYg7Vlk/UTtxKv7hBOI/AAAAAAAAbhM/ffZHZeA0CDM/s1600/cb.png" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;img height="378" src="http://external.ak.fbcdn.net/safe_image.php?d=AQBm2-bBsqSc1gh3&amp;amp;w=720&amp;amp;h=426&amp;amp;url=http%3A%2F%2Fupload.wikimedia.org%2Fwikipedia%2Fcommons%2Fthumb%2Fd%2Fd8%2FModels_of_cucurbiturils.jpg%2F720px-Models_of_cucurbiturils.jpg" width="640" /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
Cucurbit[n]urils, or CB[n] for short, are shaped sort of like a pumpkin, which is actually how they get the name (pumpkins belong to the family &lt;i&gt;cucurbitaceae&lt;/i&gt;). They are, for lack of a better word, &lt;i style="font-weight: bold;"&gt;molecular cages &lt;/i&gt;- they can trap other molecules (we call trapped molecules "guests" and the CB[n] a "host"). They don't just bind to anything and everything, though. They're very selective about their binding (and it's not always easy to predict what will bind). For example, CB[7] will trap fluorescent dyes in its cavity. The dye won't fluoresce &lt;i&gt;as long as it's in the cavity&lt;/i&gt;, but as soon as it's displaced it lights up. Phenylalanine will also bind to CB[7] and displaces the fluorescent dye. Some &lt;a href="http://pubs.acs.org/doi/abs/10.1021/ja201581x" target="_blank"&gt;clever scientists realized&lt;/a&gt;&amp;nbsp;that phenylalanine is found at the end of the insulin protein. They exploited this to create (or at least show a proof of concept for) a rapid analysis for insulin using CB[7].&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: left;"&gt;
Over and over cucurbiturils amaze me. They &lt;a href="http://onlinelibrary.wiley.com/doi/10.1002/cphc.201200879/abstract" target="_blank"&gt;affect how molecules interact with light&lt;/a&gt;, they&lt;a href="http://onlinelibrary.wiley.com/doi/10.1002/cphc.201201008/abstract" target="_blank"&gt; trick liquid phase molecules&lt;/a&gt; into thinking they're in the gas phase, they have been proposed for &lt;a href="http://onlinelibrary.wiley.com/doi/10.1002/ijch.201100040/abstract" target="_blank"&gt;drug delivery&lt;/a&gt;, &lt;a href="http://pubs.rsc.org/en/Content/ArticleLanding/2001/CC/b105153a" target="_blank"&gt;catalysis&lt;/a&gt;, &lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/11547851" target="_blank"&gt;waste management&lt;/a&gt;, and &lt;a href="http://www.cqmfscience.com/documents/Dory_CQMF_review2013.pdf" target="_blank"&gt;molecular architecture&lt;/a&gt;&amp;nbsp;to name only a few applications. What's most amazing to me is how unpredictable each new derivative can be. With each new derivative that we study we find that the chemistry is vastly different, even when the compound itself is nearly the same (I'll insert some new results from my lab here once they're published). It's not a chemical you'll run into every day, but studying this chemical is what keeps me awake at night and gets me out of bed in the morning.&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/CnoU9Gau34U" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/7839602753569502586/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/living-with-chemicals-cucurbituril.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7839602753569502586?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/7839602753569502586?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/CnoU9Gau34U/living-with-chemicals-cucurbituril.html" title="Living with chemicals: Cucurbituril" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://2.bp.blogspot.com/-y2eUuYg7Vlk/UTtxKv7hBOI/AAAAAAAAbhM/ffZHZeA0CDM/s72-c/cb.png" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/living-with-chemicals-cucurbituril.html</feedburner:origLink></entry><entry gd:etag="W/&quot;A0AER3o8cSp7ImA9WhBVE0o.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-2974983765939796282</id><published>2013-04-18T14:07:00.002-07:00</published><updated>2013-04-19T06:55:06.479-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-19T06:55:06.479-07:00</app:edited><category scheme="http://www.blogger.com/atom/ns#" term="Bad Science in the Movies" /><title>Bad Science in the Movies: Iron Man 2</title><content type="html">I've done several articles on "&lt;a href="http://www.thecollapsedwavefunction.com/search/label/Bad%20Science%20in%20the%20Movies" target="_blank"&gt;Bad Science in the Movies&lt;/a&gt;". This one was inspired by See Ar Oh, from the blog &lt;a href="http://justlikecooking.blogspot.com/" target="_blank"&gt;Just Like Cooking&lt;/a&gt;. It's my entry to his #chemmoviecarnival. I hope he's ok with a bit of physics getting mixed in (I'm a physical chemist, so it's a pretty gray area for me...)&lt;br /&gt;
&lt;br /&gt;
The scene we're talking about is this one, from Iron Man 2:&lt;br /&gt;
&lt;br /&gt;
&lt;iframe allowfullscreen="" frameborder="0" height="360" src="http://www.youtube.com/embed/JXAgs5NN6eM?feature=player_detailpage" width="640"&gt;&lt;/iframe&gt;&lt;br /&gt;
&lt;br /&gt;
Honestly, this may be one of the most baffling examples of bad science in the movies. The set up is simple: the palladium inside Tony Stark's&amp;nbsp;miniature&amp;nbsp;magic energy device is leaking into his body and slowly killing him. He needs a new energy source and, frankly, the rest of the periodic table has failed him. Stupid universe. It never creates that exact element you need, right? Of course this is Tony Stark, the engineering prodigy that built a flying suit that talks to you like a snarky butler, so he won't let the laws of physics get in the way of a good energy source - he's going to build one.&lt;br /&gt;
&lt;br /&gt;
It turns out that his father already secretly designed the new element and hid it in plans for the 1974 Stark Expo. About 39 seconds into the video above, Tony realizes that the nucleus is at the center of an atom - a novel discovery. Tony's "ah-ha!" moment happens at about 1:20.&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"The structure of the protons and neutrons is in the&amp;nbsp;pavilions...as a framework."&lt;/blockquote&gt;
And there you have it. Making a new element is &lt;i&gt;simple&lt;/i&gt;. All you need to know is how many protons, how many neutrons, and how they are arranged in the nucleus. Ignore the circular logic that an element is in fact &lt;i&gt;defined&lt;/i&gt;&lt;b&gt;&amp;nbsp;&lt;/b&gt;by the number of protons it has. Forget that this new element will likely decay the moment it is made. This new element is just what Tony needs, and he's going to &lt;b&gt;&lt;i&gt;build&lt;/i&gt;&lt;/b&gt; it.&amp;nbsp;Jarvis (the snarky butler) even verifies that this new element "should serve as a viable replacement for palladium". This is particularly amazing, since this element has&lt;b&gt;&lt;i&gt; never&lt;/i&gt;&lt;/b&gt; been experimentally studied. I suppose Jarvis could have done extensive computational studies on the element (in which case I would like to request a few minutes of wall time on that server, please).&lt;br /&gt;
&lt;br /&gt;
So then Tony has to build his new element. This requires a particle accelerator and that's what he builds, right? &amp;nbsp;It looks like one at least. It's a giant metal ring.&amp;nbsp;Tony turns it on and grabs a wrench to steer the beam into some other clear material and BAM! - you've got a new element! Here are the problems I see with his process:&lt;br /&gt;
&lt;br /&gt;
&lt;ol&gt;
&lt;li&gt;Tony didn't build a particle accelerator. He dropped in a prism to steer the beam, so apparently these are photons he's accelerating. Read that last sentence again if you didn't notice the problem. Photons. Tony is&amp;nbsp;&lt;i&gt;accelerating&lt;/i&gt;&amp;nbsp;&lt;b style="font-style: italic;"&gt;light. &lt;/b&gt;Light that is already traveling as fast as it can (or will ever) go. Whatever his source of light is he could have just&amp;nbsp;aligned&amp;nbsp;it directly and saved himself the remodeling expenses.&amp;nbsp;&lt;/li&gt;
&lt;li&gt;Tony didn't need the metal ring at all. The purpose for the metal ring &lt;b style="font-style: italic;"&gt;would&lt;/b&gt; be to create a low pressure environment (necessary in particle accelerators), but the first thing he does is steer the beam into the lab. Not only is this a serious safety violation but now his beam is at atmospheric pressure so why did he need the vacuum to begin with?&lt;/li&gt;
&lt;li&gt;But let's forget these two problems and examine what he was actually doing. The light hew was steering is visible to our eyes as a nice crisp blue, but it was also aimed at a clear target. I'll give you another moment to think about the&amp;nbsp;contradiction in that sentence.&amp;nbsp;A &lt;b&gt;&lt;i&gt;visible beam&lt;/i&gt;&lt;/b&gt;&amp;nbsp;was absorbed by a &lt;b&gt;&lt;i&gt;clear target&lt;/i&gt;&lt;/b&gt;. The target is clear&amp;nbsp;precisely because it &lt;i style="font-weight: bold;"&gt;wouldn't &lt;/i&gt;absorb any visible light. Even ignoring that, if visible light were energetic enough to rearrange nuclear structure I think life would be &lt;b&gt;&lt;i&gt;just a little bit&lt;/i&gt;&amp;nbsp;&lt;/b&gt;different.&lt;/li&gt;
&lt;/ol&gt;
But, we'll give him the benefit of the doubt. After all, he does have a pretty cool suit.&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/eVwNIURE-r8" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/2974983765939796282/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/bad-science-ironman-2.html#comment-form" title="1 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/2974983765939796282?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/2974983765939796282?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/eVwNIURE-r8/bad-science-ironman-2.html" title="Bad Science in the Movies: Iron Man 2" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/JXAgs5NN6eM/default.jpg" height="72" width="72" /><thr:total>1</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/bad-science-ironman-2.html</feedburner:origLink></entry><entry gd:etag="W/&quot;Ak8DR30yfSp7ImA9WhBUFEg.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-3048548416290245834</id><published>2013-04-17T08:12:00.002-07:00</published><updated>2013-05-01T18:41:16.395-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-05-01T18:41:16.395-07:00</app:edited><category scheme="http://www.blogger.com/atom/ns#" term="Video discussions" /><title>What is the difference between science and pseudoscience?</title><content type="html">Tonight at 6:30 MDT I'm going to be hosting a discussion of the question: "What is the difference between science and pseudoscience?"&lt;br /&gt;
&lt;br /&gt;
We'll be doing a Google "On Air" hangout, and you can tune in right here to watch. If you want to add a thought to our discussion you can do it using the Twitter hashtag #PsiDiscuss or leave a comment on this&lt;br /&gt;
page.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;nbsp;

&lt;iframe allowfullscreen="" frameborder="0" height="315" src="http://www.youtube.com/embed/CxAavbGKMdc" width="420"&gt;&lt;/iframe&gt;&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/hwV89tX6GLM" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/3048548416290245834/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/sciencevspseudoscience.html#comment-form" title="1 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3048548416290245834?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3048548416290245834?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/hwV89tX6GLM/sciencevspseudoscience.html" title="What is the difference between science and pseudoscience?" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/CxAavbGKMdc/default.jpg" height="72" width="72" /><thr:total>1</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/sciencevspseudoscience.html</feedburner:origLink></entry><entry gd:etag="W/&quot;DkMNQ3czeip7ImA9WhBVEk0.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-1865892842179230307</id><published>2013-04-16T22:53:00.000-07:00</published><updated>2013-04-17T06:14:52.982-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-17T06:14:52.982-07:00</app:edited><title>Traditional chinese medicine sneaks into peer-reviewed journal</title><content type="html">In the current issue of the Journal of Chemical Information and Modeling you'll find an article entitled "&lt;a href="http://t.co/pXdUpR0Ntf" target="_blank"&gt;Chemogenomics Approaches to Rationalizing the Mode-of-Action of Traditional Chinese and Ayurvedic Medicines&lt;/a&gt;". The paper seeks to "[reduce] the gap between Western medicine and traditional medicine" by describing the mode-of-action for a list of compounds found in common Traditional Chinese Medicine (TCM). In other words, this paper seeks to describe&lt;i&gt; how&lt;/i&gt; TCM works (though there are only a few cases where it does). In the introduction, the authors state that: &lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"Traditional medicines have been connected to efficacy in man for thousands of years (though admittedly often not in controlled clinical trial settings)"&lt;/blockquote&gt;
&lt;div&gt;
Which to me doesn't really mean anything. Of course there has been a correlation between using these medicines&amp;nbsp;and feeling better, why would anyone keep using a medicine they didn't think was working? But it's not helpful to ask if people &lt;i&gt;thought&lt;/i&gt;&amp;nbsp;a medicine worked, it's useful to ask if they actually &lt;i&gt;do &lt;/i&gt;work. For that we need to do a controlled clinical trial. Although the authors admit that many TCM compounds fail phase II and III clinical trials because they &lt;b&gt;&lt;i&gt;don't work&lt;/i&gt;&lt;/b&gt;, they insist that these failures prove that chemical derivatives are therefore needed to improve clinical efficacy. In other words, we know that compound &lt;i&gt;X&lt;/i&gt;&amp;nbsp;doesn't really work, so we'll change it a little bit and see if compound &lt;i&gt;X' &lt;/i&gt;works any better (this is a common technique in drug discovery, and if they want to pursue this path that's fine).&amp;nbsp;Two sentences later, almost in the same breath that they admit a lack of clinical efficacy, they claim that&amp;nbsp;nature has evolved a multitude of chemical compounds with desirable properties. They later claim that:&lt;/div&gt;
&lt;blockquote class="tr_bq"&gt;
"...natural products as well as traditional medicines have been an undervalued resource of lead structures in the current practice of drug discovery."&lt;/blockquote&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://www.drdonfan.ca/images/tcm.ht1.jpg" imageanchor="1" style="clear: left; float: left; margin-bottom: 1em; margin-right: 1em;"&gt;&lt;img alt="" border="0" src="http://www.drdonfan.ca/images/tcm.ht1.jpg" title="" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div&gt;
A statement that I don't feel is supported by the literature. If anything natural product synthesis has been&amp;nbsp;&lt;i&gt;&lt;b&gt;over&lt;/b&gt;&lt;/i&gt;valued by many researchers. Natural product synthesis has been a pretty &lt;i style="font-weight: bold;"&gt;huge&lt;/i&gt;&amp;nbsp;field of research.&amp;nbsp;Even so, many of our most effective drugs on the market today are derived from natural products - Asprin, Digoxin, and Premarin to name a few. Obviously nature has something to offer us. The study even mentions &lt;a href="http://trstmh.oxfordjournals.org/content/101/2/113" target="_blank"&gt;Artesunate&lt;/a&gt;, a derivative of a compound originally used in TCM that is now the gold standard for treating malaria.&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
I'm not saying that this paper should have been rejected outright. Quite the opposite, the technique itself seems fine to me. The computational modeling of protein/compound interactions could allow researchers to quickly determine which compounds are worth studying further. Yes, TCM compounds were used in the study, but that's actually pretty unimportant to the study itself; the method could have been applied to any arbitrary list of compounds.&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
And I'm not saying that we should discount all alternative medicine. Artesunate (the malaria drug) is one example of why that would be foolish. We can't refuse to study TCM compounds based on principle; we don't know &lt;i&gt;a priori&lt;/i&gt;&amp;nbsp;where we'll find relevant compounds. However, I find it completely unnecessary to discuss alternative medicine to the degree that is found in this article. Entire paragraphs are dedicated to the idea of balance as defined by TCM and throughout the article you'll find mention of "synergistic medicines" and other alternative medicine ideas. The authors seem to take every opportunity they can to connect this study to alternative medicine, a connection that I don't think is warranted given that the journal's focus is &lt;i&gt;computational modeling&lt;/i&gt;.&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
Furthermore, proof that &lt;b&gt;&lt;i&gt;some&lt;/i&gt;&amp;nbsp;&lt;/b&gt;compounds used in TCM are effective does not imply that TCM &lt;b&gt;&lt;i&gt;as a whole&lt;/i&gt;&lt;/b&gt; is effective at all, which seems to be the general theme of the paper. It seems to me that the authors are trying to sneak alternative medicine in as legitimate science. The paper even contained a diagram like the one above, explaining the principles of balance in TCM - an addition I thought was completely&amp;nbsp;unnecessary&amp;nbsp;and unrelated. Sure, you could say it belongs in the introduction as historical background of the topic, but to me it detracts from the real purpose of the paper - the description of a novel computational method to screen for new target compounds. Leave out the nonsense and get back to the chemistry already.&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/k_viBQgYTsk" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/1865892842179230307/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/traditional-chinese-medicine-sneaks.html#comment-form" title="3 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/1865892842179230307?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/1865892842179230307?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/k_viBQgYTsk/traditional-chinese-medicine-sneaks.html" title="Traditional chinese medicine sneaks into peer-reviewed journal" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>3</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/traditional-chinese-medicine-sneaks.html</feedburner:origLink></entry><entry gd:etag="W/&quot;CkMFRHw_cCp7ImA9WhBWGEU.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-3654003268690719639</id><published>2013-04-13T12:13:00.002-07:00</published><updated>2013-04-13T12:13:35.248-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-13T12:13:35.248-07:00</app:edited><title>Being wrong isn't just okay, it's required!</title><content type="html">At the end of my second year of graduate school I was standing in front of my PhD committee, the five people that will one day decide whether or not I get my PhD, presenting my research. When I had finished presenting I didn't breathe a sigh of relief - the hardest part was yet to come: Questions. &lt;i&gt;Difficult&lt;/i&gt; questions. Questions whose sole purpose is to find something you don't know and ask you &lt;b&gt;&lt;i&gt;more&lt;/i&gt;&lt;/b&gt; questions on that thing. Just to watch you squirm.&lt;sup&gt;1&lt;/sup&gt; I was doing pretty well until I was asked a problem that sent me to the blackboard with some chalk to do a quick derivation and calculation. My mind went blank. I&lt;b&gt;&lt;i&gt; hate&lt;/i&gt;&lt;/b&gt; doing math in front of people.&lt;sup&gt;2&lt;/sup&gt; I made all sorts of mistakes over the next 15 minutes. Big mistakes. &lt;b&gt;Giant&lt;/b&gt; &lt;i&gt;&lt;b&gt;fundamental&lt;/b&gt;&lt;/i&gt; flaws in my thinking that a freshman chemistry student could easily correct me on.&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;/div&gt;
So there I was, in a meeting to decide whether or not I deserved another year in the program for my PhD, and I was failing. Why, then, wasn't I kicked out of the program? That may be a question that only my committee can answer, but I'll take a stab at it. I wasn't kicked out because&amp;nbsp;&lt;b&gt;&lt;i&gt;it's okay to be wrong&lt;/i&gt;&lt;/b&gt;. It's okay to have misunderstandings, to not know something even if almost everyone else does. What's &lt;i style="font-weight: bold;"&gt;not&lt;/i&gt;&amp;nbsp;okay is&amp;nbsp;refusing to admit that you're wrong.&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://www.allthingsdemocrat.com/wp-content/uploads/2011/12/Im-Stupid1.jpg" imageanchor="1" style="clear: right; float: right; margin-bottom: 1em; margin-left: 1em;"&gt;&lt;img border="0" height="320" src="http://www.allthingsdemocrat.com/wp-content/uploads/2011/12/Im-Stupid1.jpg" width="320" /&gt;&lt;/a&gt;&lt;/div&gt;
Scientists are wrong. A lot. It's really part of our process. An unanswered question makes me feel stupid, which leads to searching for the answer, learning, knowledge, and moving on to the next question. After doing this for several years I've actually begun to &lt;i style="font-weight: bold;"&gt;crave&lt;/i&gt;&amp;nbsp;feeling stupid - it means I'm about to learn something awesome.&amp;nbsp;A few years ago there was a great essay in The Journal of Cell Science called &lt;a href="http://jcs.biologists.org/content/121/11/1771.full" target="_blank"&gt;"The importance of stupidity in scientific research"&lt;/a&gt;&amp;nbsp;in which the author postulates that feeling stupid is an integral part of science. In my first years as a graduate student I would sometimes ask my advisor something like: "Ok, so when I do &lt;i&gt;x&lt;/i&gt;&amp;nbsp;what will happen?" His response was always "I don't know, that's why it's called research." Stupidity will always exist at the edge of human knowledge.&lt;br /&gt;
&lt;br /&gt;
Opponents of many scientific disciplines will often often point to errors scientists have made in the past as a reason &lt;b&gt;&lt;i&gt;not&lt;/i&gt;&lt;/b&gt; to believe what they say. After all, aren't scientists just going to change their mind again? Why should I believe what they are saying right now? The fact that science is ever changing should &lt;i&gt;never&lt;/i&gt;&amp;nbsp;be seen as a weakness. In fact, it's one of the greatest strengths that science has. Science helps us see where our understanding of the universe is wrong and correct accordingly.&lt;sup&gt;3&lt;/sup&gt;&lt;br /&gt;
&lt;br /&gt;
More importantly than being okay, being wrong is &lt;i style="font-weight: bold;"&gt;expected&lt;/i&gt;. Let's face it, you don't know everything. Admitting you don't know something is probably one of the most important aspects of science. It's only when you admit you don't know that you can actually learn. Just as there is an edge to current human knowledge, there is an edge to your own personal knowledge. If you're afraid of being stupid, then what you're actually afraid of is expanding your own knowledge. Likewise, if you mock someone else's stupidity, you're really just mocking their attempts to learn. The universe is awesome, why not take the time to tell someone about it?&lt;br /&gt;
&lt;br /&gt;
And, as usual, Randall Munroe (XKCD) can say it better than I can, and in fewer words:&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://imgs.xkcd.com/comics/ten_thousand.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" src="http://imgs.xkcd.com/comics/ten_thousand.png" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Notes&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
[1] There are other reasons to ask these questions, of course, but sometimes you can see a little smile on a committee member's face when they know they've found your educational weak spot.&lt;/blockquote&gt;
&lt;blockquote class="tr_bq"&gt;
[2] Since some of my committee members may actually read this, it's probably unwise to admit that. They'll probably use it to their advantage at our next meeting.&lt;/blockquote&gt;
&lt;blockquote class="tr_bq"&gt;
[3] There seems to be two different definitions of "truth" used in science and religion. Religion usually begins with a statement of absolute truth and builds a world view around that truth. Science on the other hand makes observations and builds a truth to match those observations. This truth is &lt;b&gt;&lt;i&gt;never&lt;/i&gt;&lt;/b&gt;&amp;nbsp;purported to be absolute truth.&amp;nbsp; The big difference is that "truth" in the scientific sense is allowed (and required) to change while "truth" from a religious viewpoint is used as a logical premise and, therefore, cannot be changed.&amp;nbsp;&lt;/blockquote&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/8-hGTSmcabY" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/3654003268690719639/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/being-wrong-isnt-just-okay-its-required.html#comment-form" title="2 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3654003268690719639?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3654003268690719639?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/8-hGTSmcabY/being-wrong-isnt-just-okay-its-required.html" title="Being wrong isn't just okay, it's required!" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>2</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/being-wrong-isnt-just-okay-its-required.html</feedburner:origLink></entry><entry gd:etag="W/&quot;DUQFQHw_cCp7ImA9WhBWF0w.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-4735388046117268613</id><published>2013-04-11T14:55:00.000-07:00</published><updated>2013-04-11T14:55:11.248-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-11T14:55:11.248-07:00</app:edited><title /><content type="html">Come join me for AskScience Live, happening RIGHT NOW!&lt;br /&gt;
&lt;br /&gt;
Add your questions to the discussion using Twitter (#AskSciLive)&lt;br /&gt;
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&lt;iframe width="560" height="315" src="http://www.youtube.com/embed/htPyBQJG2RE" frameborder="0" allowfullscreen&gt;&lt;/iframe&gt;&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/VoMzPFhZewY" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/4735388046117268613/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/blog-post.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4735388046117268613?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4735388046117268613?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/VoMzPFhZewY/blog-post.html" title="" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/htPyBQJG2RE/default.jpg" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/blog-post.html</feedburner:origLink></entry><entry gd:etag="W/&quot;AkQDRX4zfSp7ImA9WhBWFk0.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-5171520231510880960</id><published>2013-04-10T07:01:00.000-07:00</published><updated>2013-04-10T08:39:34.085-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-10T08:39:34.085-07:00</app:edited><title>Hello visitors from SMBC Comics!</title><content type="html">If you're on my site today there is a strong chance that you were sent here from SMBC Comics. Zach is a great guy, isn't he?&lt;br /&gt;
&lt;br /&gt;
Anyways, you're no doubt looking for the post that he wrote, right? Well, calm down. I'll point you there soon enough. Let me give you a tour of my site first. Here are a few of the things I write about:&lt;br /&gt;
&lt;br /&gt;
&lt;a href="http://www.thecollapsedwavefunction.com/search/label/Bad%20Science%20in%20the%20Movies" target="_blank"&gt;Bad Science in the Movies&lt;/a&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;a href="http://www.thecollapsedwavefunction.com/search/label/Science%20Myths%20and%20Misconceptions" target="_blank"&gt;Science Myths and Misconceptions&lt;/a&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;a href="http://www.thecollapsedwavefunction.com/search/label/Philosophy%20of%20Science" target="_blank"&gt;Philosophy of Science&lt;/a&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;a href="http://www.thecollapsedwavefunction.com/search/label/Homeopathy" target="_blank"&gt;Quackery (like homeopathy)&lt;/a&gt;&lt;br /&gt;
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&lt;a href="http://www.thecollapsedwavefunction.com/search/label/Evolution" target="_blank"&gt;Evolution&lt;/a&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;a href="http://www.thecollapsedwavefunction.com/search/label/Living%20with%20Chemicals" target="_blank"&gt;"Living with Chemicals"&lt;/a&gt; - a series on why you shouldn't be scared of chemicals because chemicals are everywhere and they're awesome.&lt;br /&gt;
&lt;br /&gt;
If you like what you see you can follow me on &lt;a href="http://twitter.com/thecollapsedpsi" target="_blank"&gt;Twitter&lt;/a&gt;&amp;nbsp;or like my &lt;a href="http://facebook.com/thecollapsedwavefunction" target="_blank"&gt;Facebook&lt;/a&gt; page.&lt;br /&gt;
&lt;br /&gt;
Also, come listen to&lt;a href="http://www.thecollapsedwavefunction.com/2013/03/askscience-live.html" target="_blank"&gt; AskScience Live&lt;/a&gt; with me an some of the panelists from reddit's &lt;a href="http://reddit.com/r/askscience" target="_blank"&gt;/r/askscience&lt;/a&gt;&amp;nbsp;tomorrow at &lt;a href="http://asksciencelive.com/" target="_blank"&gt;6 pm EDT&lt;/a&gt;.&lt;br /&gt;
&lt;br /&gt;
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And &lt;a href="http://www.thecollapsedwavefunction.com/2013/02/nuclear-fusion-and-why-its-awesome.html" target="_blank"&gt;here's that post by Zach&lt;/a&gt; that you want to read...&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/YBA9N9a1JvY" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/5171520231510880960/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/hello-visitors-from-smbc-comics.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/5171520231510880960?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/5171520231510880960?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/YBA9N9a1JvY/hello-visitors-from-smbc-comics.html" title="Hello visitors from SMBC Comics!" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/hello-visitors-from-smbc-comics.html</feedburner:origLink></entry><entry gd:etag="W/&quot;CE4ERnw6eyp7ImA9WhBWEEQ.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-4642164823843641650</id><published>2013-04-04T09:28:00.001-07:00</published><updated>2013-04-04T09:28:27.213-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-04T09:28:27.213-07:00</app:edited><title>Science goes BOOM!</title><content type="html">Over the last 24 hours on Twitter there has been some interesting discussion on chemistry teaching methods. Specifically, &lt;b&gt;&lt;i&gt;explosions&lt;/i&gt;&lt;/b&gt;.&lt;br /&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;/div&gt;
&lt;blockquote class="twitter-tweet"&gt;
Good chemistry outreach should excite the public with the true potential of modern chemistry, not just blow things up. @&lt;a href="https://twitter.com/chemistryworld"&gt;chemistryworld&lt;/a&gt;&lt;br /&gt;
— David K Smith (@professor_dave) &lt;a href="https://twitter.com/professor_dave/status/319421685835112448"&gt;April 3, 2013&lt;/a&gt;&lt;/blockquote&gt;
&lt;blockquote class="twitter-tweet"&gt;
@&lt;a href="https://twitter.com/chemistryworld"&gt;chemistryworld&lt;/a&gt; of course, but &lt;a href="https://twitter.com/search/%23chemexplosions"&gt;#chemexplosions&lt;/a&gt; capture imagination and cover kinetics energetically and entropy.&lt;br /&gt;
— Chem 2006 (@Chem2006) &lt;a href="https://twitter.com/Chem2006/status/319430286461001729"&gt;April 3, 2013&lt;/a&gt;&lt;/blockquote&gt;
&lt;script async="" charset="utf-8" src="//platform.twitter.com/widgets.js"&gt;&lt;/script&gt;

&lt;br /&gt;
&lt;blockquote class="twitter-tweet"&gt;
On flip side, are &lt;a href="https://twitter.com/search/%23chemexplosions"&gt;#chemexplosions&lt;/a&gt; lecs for kids false advertising? How often do we do explosions in research/teaching labs? @&lt;a href="https://twitter.com/chemistryworld"&gt;chemistryworld&lt;/a&gt;&lt;br /&gt;
— Alasdair Taylor (@AWTaylor83) &lt;a href="https://twitter.com/AWTaylor83/status/319439075469832193"&gt;April 3, 2013&lt;/a&gt;&lt;/blockquote&gt;
&lt;script async="" charset="utf-8" src="//platform.twitter.com/widgets.js"&gt;&lt;/script&gt;

&lt;br /&gt;
&lt;blockquote class="twitter-tweet"&gt;
My problem is statement 'any chemical lecture is greatly enhanced by an explosion' in this article &lt;a href="http://t.co/fG41yhhaer" title="http://po.st/gzMXB9"&gt;po.st/gzMXB9&lt;/a&gt; &lt;a href="https://twitter.com/search/%23chemexplosions"&gt;#chemexplosions&lt;/a&gt;&lt;br /&gt;
— David K Smith (@professor_dave) &lt;a href="https://twitter.com/professor_dave/status/319429732561190912"&gt;April 3, 2013&lt;/a&gt;&lt;/blockquote&gt;
&lt;br /&gt;
Most of the comments that I saw &amp;nbsp;were of the opinion that demos should be more positive - which, to me, means that they think a balloon exploding is negative (which I just don't see). Sure, you can overdo it. You don't need an explosion every day and there are certainly plenty of other really interesting demos to help teach. But I just don't see what's wrong with a little bang every now and then. For example, filling a balloon with hydrogen and oxygen will produce a loud bang. A balloon with just hydrogen will not be as loud. Why? Both balloons are explosive by the reaction:&lt;br /&gt;
&lt;br /&gt;
&lt;div style="text-align: center;"&gt;
&lt;img alt="2{H_2} + {O_2} \to 2{H_2}O" class="ee_img tr_noresize" eeimg="1" longdesc="http://docs.google.com/MathType!MTEF!2!1!+-feaagKart1ev2aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLnhiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr4rNCHbGeaGqjpu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-xfr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaGcbaGaaGOmaiaadIeadaWgaaWcbaGaaGOmaaqabaGccqGHRaWkcaWGpbWaaSbaaSqaaiaaikdaaeqaaOGaeyOKH4QaaGOmaiaadIeadaWgaaWcbaGaaGOmaaqabaGccaWGpbaaaa!4039!" src="http://chart.apis.google.com/chart?cht=tx&amp;amp;chs=1x0&amp;amp;chf=bg,s,FFFFFF00&amp;amp;chco=000000&amp;amp;chl=2%7BH_2%7D%20%2B%20%7BO_2%7D%20%5Cto%202%7BH_2%7DO" style="vertical-align: middle;" /&gt;
&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
However, the balloon that is filled with hydrogen and oxygen reacts much faster, and thus the louder explosion (it reacts faster because hydrogen and oxygen are already mixed). There are plenty other examples (butane balloons compared to propane balloons, for one), but the idea is the same - sometimes an explosion can help you teach.&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
I can see both sides to this story. My undergrad education was very slim on explosions. In fact, I can't remember a single explosion during a lecture. I don't feel like I missed out. Chemistry was interesting to me for more reasons than the explosions. On the other hand, in graduate school I've seen more than my fair share of explosions (seriously, every professor here is like some deranged pyromaniac). I've seen students become interested because of the demos (though I don't think I can say with any certainty it was because of the explosions).&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
Of course I can see the point that Dr. Smith is making. If we're just blowing something up, or using an explosion to supplement poor teaching ability we're obviously doing something wrong. An explosion shouldn't be a crutch to keep students interested - Chemistry can be awesome without the explosions. A demonstration should have a specific purpose and should be tied to a specific concept you're trying to teach. Sure, there are times when luminol, a howling gummy bear, or elephant toothpaste are the demos you should be using, but every now and then you just need a good explosion.&amp;nbsp;&lt;/div&gt;
&lt;script async="" charset="utf-8" src="//platform.twitter.com/widgets.js"&gt;&lt;/script&gt;&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/PFhRrhsZJXI" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/4642164823843641650/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/science-goes-boom.html#comment-form" title="6 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4642164823843641650?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/4642164823843641650?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/PFhRrhsZJXI/science-goes-boom.html" title="Science goes BOOM!" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>6</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/science-goes-boom.html</feedburner:origLink></entry><entry gd:etag="W/&quot;C0IDQX8_eSp7ImA9WhBXGUo.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-5832546458487546031</id><published>2013-04-02T23:37:00.001-07:00</published><updated>2013-04-02T23:46:10.141-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-04-02T23:46:10.141-07:00</app:edited><title>Women in STEM</title><content type="html">&lt;div&gt;
About three weeks ago &lt;span id="goog_2102456049"&gt;&lt;/span&gt;I read this tweet by&amp;nbsp;&lt;a href="https://twitter.com/KariByron" target="_blank"&gt;@KariByron&lt;/a&gt;, of MythBusters fame, about women with STEM (Science, Technology, Engineering, Mathematics) careers:&lt;/div&gt;
&lt;blockquote class="twitter-tweet"&gt;
To women in STEM fields,What made you choose your profession?Thanks.&lt;br /&gt;
— Kari Byron (@KariByron) &lt;a href="https://twitter.com/KariByron/status/312208153196503040"&gt;March 14, 2013&lt;/a&gt;&lt;/blockquote&gt;
&lt;script async="" charset="utf-8" src="//platform.twitter.com/widgets.js"&gt;&lt;/script&gt;

&lt;br /&gt;
&lt;div&gt;
Which I promptly retweeted to my close friend, Angela. Not only has she written for this blog in the past, but she works in the lab across the hall from me. It seemed obvious to me that she would have something interesting to add to the conversation, what with her being a woman and all...&lt;br /&gt;
&lt;br /&gt;
Well, the next day when I saw her I asked about the tweet. I don't think I can adequately describe the evil look she gave me, but our conversation went a little bit like this:&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"I don't know, Chad" she said, "why did &lt;i style="font-weight: bold;"&gt;you&lt;/i&gt;&amp;nbsp;choose this career?"&amp;nbsp;&lt;/blockquote&gt;
&lt;blockquote class="tr_bq"&gt;
"Ummm...because...I don't know. I guess because science is awesome and it was something that interested me. It was something I could imagine myself happily doing as a career."&amp;nbsp;&lt;/blockquote&gt;
&lt;blockquote class="tr_bq"&gt;
"So why do you think &lt;i style="font-weight: bold;"&gt;my&lt;/i&gt;&amp;nbsp;response would be any different, just because I'm a woman?"&lt;/blockquote&gt;
And for some reason I was shocked. It seems that Angela wasn't the only one to think this way, either. Later that day Kari followed up her first tweet with this one:&lt;/div&gt;
&lt;div&gt;
&lt;blockquote class="twitter-tweet"&gt;
Most common answer to why women chose STEM careers- 1.help the world/make a difference &amp;nbsp;2.Supportive father &amp;nbsp;Interesting&lt;br /&gt;
— Kari Byron (@KariByron) &lt;a href="https://twitter.com/KariByron/status/312270891729948672"&gt;March 14, 2013&lt;/a&gt;&lt;/blockquote&gt;
For some reason I had never realized (or never put much thought into) this &lt;b&gt;&lt;i&gt;glaringly&lt;/i&gt;&lt;/b&gt; obvious point: Women choose a STEM career for the same reason that men do, so &lt;i style="font-weight: bold;"&gt;why &lt;/i&gt;do we market it so differently? At my university there is an annual conference for "Women in Science". I'm sure you can guess what Angela's feelings are - Why even have a conference for women in science? After all there isn't a "men in science" conference, right?&lt;br /&gt;
&lt;br /&gt;
But the fact remains - there are fewer women than men that choose a STEM career path. The US Department of Commerce, in a 2012 report stated that&amp;nbsp;&lt;a href="http://www.esa.doc.gov/sites/default/files/reports/documents/womeninstemagaptoinnovation8311.pdf" target="_blank"&gt;the STEM workforce is a shocking&amp;nbsp;&lt;i&gt;&lt;b&gt;76% men&lt;/b&gt;&lt;/i&gt;&lt;/a&gt;, while the total workforce is split pretty evenly between men and women.&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://3.bp.blogspot.com/-v7ZCP4OpeV4/UVu6HDjc3-I/AAAAAAAAbpA/8MZCUMdlWLs/s1600/WomeninSTEM.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" src="http://3.bp.blogspot.com/-v7ZCP4OpeV4/UVu6HDjc3-I/AAAAAAAAbpA/8MZCUMdlWLs/s1600/WomeninSTEM.png" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;br /&gt;
And the problem doesn't end there. Not only are women underrepresented in STEM fields, but there seems to be a double standard from within our own community. As scicurious points out in&lt;a href="http://scientopia.org/blogs/scicurious/2013/04/02/being-taken-seriously-the-double-standard/" target="_blank"&gt; this great article&lt;/a&gt;, it's common to see an accomplished male professor sporting an unkempt beard, Hawaiian shirt, and a holey pants at a scientific conference, but you won't often see women dress as casually.&amp;nbsp;I have never felt pressured to dress formally at any conferences, nor have I even taken a second look at any women to know how they are dressed. I suppose I'll have to believe scicurious that women feel this pressure.&lt;br /&gt;
&lt;br /&gt;
But the double standard isn't just about dress. Look at this obituary, published just a few days ago:&lt;br /&gt;
&lt;br /&gt;
&lt;table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"&gt;&lt;tbody&gt;
&lt;tr&gt;&lt;td style="text-align: center;"&gt;&lt;a href="http://1.bp.blogspot.com/-nscihUhSBDw/UVvGJtlnH3I/AAAAAAAAbpQ/tBub7F1guE8/s1600/Yvonne+brill.png" imageanchor="1" style="margin-left: auto; margin-right: auto;"&gt;&lt;img border="0" src="http://1.bp.blogspot.com/-nscihUhSBDw/UVvGJtlnH3I/AAAAAAAAbpQ/tBub7F1guE8/s1600/Yvonne+brill.png" /&gt;&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class="tr-caption" style="text-align: center;"&gt;Screen capture from NYT website provided by &amp;nbsp;&lt;a href="http://www.buzzfeed.com/shani/new-york-times-leads-obit-for-brilliant-rocket-scientist-wit" target="_blank"&gt;BuzzFeed&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
The obituary has been revised, but the original began: "She made a mean beef stroganoff...and oh yeah, and she also invented the propulsion system that&lt;i style="font-weight: bold;"&gt;&amp;nbsp;&lt;/i&gt;&lt;b&gt;&lt;i&gt;became the gold standard&lt;/i&gt;&lt;/b&gt; for keeping satellites in orbit." (I may have paraphrased a bit). Now, I don't doubt her ability to make beef stroganoff. In fact, if this article had been written by her children or grandchildren her stroganoff may have been placed&amp;nbsp;appropriately at the beginning.&amp;nbsp;But&amp;nbsp;I can't think of a scenario when it would seem suitable for the obituary of a male scientist to open with something so absolutely trivial. To compare, let's look at what the same author says about a male scientist &lt;a href="http://www.nytimes.com/2013/03/17/business/ian-ross-who-led-bell-labs-dies-at-85.html?ref=douglasmartin&amp;amp;_r=0" target="_blank"&gt;just &lt;i style="font-weight: bold;"&gt;fourteen days&lt;/i&gt;&amp;nbsp;earlier&lt;/a&gt;.&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;b&gt;&lt;u&gt;So what do we do now?&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
After&amp;nbsp;researching&amp;nbsp;and&amp;nbsp;writing&amp;nbsp;this article two things are obvious to me:&lt;br /&gt;
&lt;ol&gt;
&lt;li&gt;We need more women to choose STEM careers.&lt;/li&gt;
&lt;li&gt;Women don't need special treatment or special reasons to make that choice.&amp;nbsp;&lt;/li&gt;
&lt;/ol&gt;
&lt;/div&gt;
&lt;div&gt;
But number 2 seems to conflict with number one, doesn't it? If we want more women in STEM careers don't we need to appeal directly to them? How can we get more women involved in science while at the same time not making a fuss about women in science? Do women need/deserve special treatment to choose a career in science?&lt;br /&gt;
&lt;br /&gt;
Probably not. Instead, they just need to know from a young age that the option is available. PBS has a 30 minute program that I think has a pretty good job of attracting young girls to STEM careers without propagating any female stereotypes. &lt;i&gt;SciGirls &lt;/i&gt;stars&amp;nbsp;a cartoon teenager, Izzie, who leads a group of real life girls on adventures in biology, engineering, and other STEM related fields.&amp;nbsp;Throughout&amp;nbsp;the show the girls are mentored by real life female scientists and engineers. I watched a couple of episodes, and I think it's a great example of how to get more young girls excited in science. They don't need a special reason to pursue science; science is awesome just the way it is.&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/ia0GQ-4f3BE" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/5832546458487546031/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/04/women-in-stem.html#comment-form" title="4 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/5832546458487546031?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/5832546458487546031?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/ia0GQ-4f3BE/women-in-stem.html" title="Women in STEM" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://3.bp.blogspot.com/-v7ZCP4OpeV4/UVu6HDjc3-I/AAAAAAAAbpA/8MZCUMdlWLs/s72-c/WomeninSTEM.png" height="72" width="72" /><thr:total>4</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/04/women-in-stem.html</feedburner:origLink></entry><entry gd:etag="W/&quot;CkIDQnc6cCp7ImA9WhBXFU4.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-8105464241796152588</id><published>2013-03-28T20:14:00.002-07:00</published><updated>2013-03-28T21:16:13.918-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-03-28T21:16:13.918-07:00</app:edited><title>AskScience Live!</title><content type="html">So I've got some amazing news. Many of you have heard of reddit, the "frontpage of the internet". &lt;a href="http://www.thecollapsedwavefunction.com/2012/12/the-best-science-resources-on-internet.html" target="_blank"&gt;In the past &lt;/a&gt;I mentioned &lt;a href="http://reddit.com/" target="_blank"&gt;reddit.com&lt;/a&gt;&amp;nbsp;as one of the greatest science resources that the internet has, and I still believe that. Sure, there are a lot of really horrible things about reddit, but if you're looking in the right places there are some really great conversations.&lt;br /&gt;
&lt;br /&gt;
&lt;img src="https://encrypted-tbn3.gstatic.com/images?q=tbn:ANd9GcRGfikQcNHtGZ7E3FhNaph6sPIXrNmNWJXw0MgS_PYs0lDtRoXdRw" /&gt;&lt;br /&gt;
&lt;a href="http://www.reddit.com/r/askscience" target="_blank"&gt;AskScience&lt;/a&gt; is one of those places. In the AskScience forum you can ask just about any science question you have and be almost guaranteed to get input from someone that is an expert in that field. AskScience has over 2,000 panelists in fields ranging from biology and chemistry to anthropology and psychology. Not anyone can be a panelist, though. You need to be at least a graduate student in your field and demonstrate that you can explain your field correctly and simply to a lay audience. Moderation can sometimes be pretty heavy handed, which makes the discussion usually on point and science based.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Doing something new: AskScienceLive&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
Over the past month or two I have been working with some of the other panelists to create a video podcast version of the forum. We are now pleased to announce AskScienceLive! We've gathered together experts from a few fields, and we're going to be doing a Google "On Air" hangout. Our first episode will be April 11th, 6pm EDT. We will be taking questions asked on Twitter and answering them &lt;b&gt;&lt;i&gt;live&lt;/i&gt;&lt;/b&gt;. This could really be an awesome event, so please mark your calendars and bring your toughest science questions!&lt;br /&gt;
&lt;br /&gt;
Please check out &lt;a href="http://asksciencelive.com/"&gt;asksciencelive.com&lt;/a&gt;&amp;nbsp;(a current work in progress website) and stay tuned for more information and more episodes to come!&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/OBQDtp2IeGM" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/8105464241796152588/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/03/askscience-live.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/8105464241796152588?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/8105464241796152588?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/OBQDtp2IeGM/askscience-live.html" title="AskScience Live!" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/03/askscience-live.html</feedburner:origLink></entry><entry gd:etag="W/&quot;D0cBQX8yfSp7ImA9WhBXE00.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-5847393874777070539</id><published>2013-03-25T22:52:00.001-07:00</published><updated>2013-03-26T06:37:30.195-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-03-26T06:37:30.195-07:00</app:edited><title>What does "Organic" mean, anyway?</title><content type="html">"Organic" is a term that's thrown around a lot, and it means a lot of different things to a lot of different people. Sometimes organic means that a tomato has been grown without pesticides, other times it means anything derived from living things, and to a chemist it usually means any compound that contains both carbon and hydrogen. An "organic lifestyle" could either mean that you're attempting to live in tune with mother nature or it could mean you don't get out of the lab very often.&lt;br /&gt;
&lt;br /&gt;
&lt;a href="http://www.ecofood-enpi.ru/assets/images/znaki/usdaorganic.gif" imageanchor="1" style="clear: right; float: right; margin-bottom: 1em; margin-left: 1em;"&gt;&lt;img border="0" height="320" src="http://www.ecofood-enpi.ru/assets/images/znaki/usdaorganic.gif" width="320" /&gt;&lt;/a&gt;The internet (or at least the chemistry corner of Twitter) has had some great discussion over the last few weeks dealing with chemophobia. Today I read a great article on the blog "&lt;a href="http://behindnmrlines.blogspot.com/2013/03/in-defense-of-chemphobia.html?spref=tw" target="_blank"&gt;Behind NMR Lines&lt;/a&gt;" with a surprisingly&amp;nbsp;un-chemist-like approach to chemophobia. The &lt;i&gt;standard&lt;/i&gt; response from chemists who hear complaints about "chemicals" is to say something along the lines of "well, even &lt;b&gt;&lt;i&gt;water&lt;/i&gt;&amp;nbsp;&lt;/b&gt;is a chemical". The author points out that, while this argument is completely true, it sidesteps the actual concern. When people say "chemical" they obviously don't mean "all matter, everywhere", they mean harmful chemicals.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;What it means to me isn't what it means to you&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
I wonder if we make the same mistake by being too rigid with our definition of "organic". As a chemist, when I hear the word "organic", I immediately think of...well...&lt;i&gt;&lt;a href="http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Graphen.jpg/300px-Graphen.jpg" target="_blank"&gt;chicken wire&lt;/a&gt;&lt;/i&gt; (the chemistry "shorthand" for organic compounds often &lt;a href="http://foodcyclist.com/wp-content/uploads/2012/08/free-range-organic-chicken-4-of-13.jpg" target="_blank"&gt;looks a lot like fencing for a chicken coop&lt;/a&gt;). I think of the definition &lt;i style="font-weight: bold;"&gt;I&lt;/i&gt;&amp;nbsp;know. I've had years of schooling that drilled "organic" into my head as meaning "a compound containing carbon and hydrogen". This definition works, but it makes things like "&lt;a href="http://www.saltworks.us/shop/product.asp?idProduct=170" target="_blank"&gt;organic sea salt&lt;/a&gt;" sound like absolute nonsense.&lt;br /&gt;
&lt;br /&gt;
So for years I have argued that the term "organic", as used by the general public, is not only ridiculous but almost meaningless. However, I wonder if I've been wrong. I wonder if it wouldn't be more appropriate to see organic (chemistry) and organic (food) as homonyms, similar to bark (dog) and bark (tree). Certainly the distributors of "organic sea salt" think so - their product description says:&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
"There are no chemical additives or processing aids used in Marlborough Flaky &amp;amp; Pacific Natural Sea Salt production and there is just one ingredient - seawater. The process fits in with organic principles and is Certified by Bio-Gro New Zealand"&amp;nbsp;&lt;/blockquote&gt;
It seems, then, that we are using the same word to mean very different things.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Semantic Drift or Homonyms?&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
In response to the "Behind NMR Lines" post,&amp;nbsp;&lt;a href="https://twitter.com/V_Saggiomo" target="_blank"&gt;@V_Saggiomo&lt;/a&gt;&amp;nbsp;made the following point:&lt;br /&gt;
&lt;div style="text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;blockquote class="twitter-tweet"&gt;
&lt;div style="text-align: center;"&gt;
“Semantic Drift” of the words “chemical” &lt;a href="http://t.co/ZxbbN1UFFo" title="http://en.wikipedia.org/wiki/Semantic_change"&gt;en.wikipedia.org/wiki/Semantic_…&lt;/a&gt; MT:“@&lt;a href="https://twitter.com/_byronmiller"&gt;_byronmiller&lt;/a&gt;: In defense of &lt;a href="https://twitter.com/search/%23chemphobia"&gt;#chemphobia&lt;/a&gt; &lt;a href="http://t.co/ePfsP0ISA1" title="http://behindnmrlines.blogspot.co.uk/2013/03/in-defense-of-chemphobia.html"&gt;behindnmrlines.blogspot.co.uk/2013/03/in-def…&lt;/a&gt;”&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
— Vittorio Saggiomo (@V_Saggiomo) &lt;a href="https://twitter.com/V_Saggiomo/status/316320909420019712"&gt;March 25, 2013&lt;/a&gt;&lt;/div&gt;
&lt;/blockquote&gt;
Which I think applies just as easily to "organic". You could easily argue that organic chemistry began in 1828, with the synthesis of urea. Prior to this synthesis it was believed that living organisms had a special property (vitalism) that couldn't be synthesized in a lab. The synthesis of urea, a compound found only in living &lt;b&gt;&lt;i&gt;organisms&lt;/i&gt;&lt;/b&gt;, sent that theory right down the toilet (a pun that is totally intended), and organic chemistry was born.&lt;br /&gt;
&lt;br /&gt;
Now let's look at the other use of the word organic. Proponents of organic farming claim that organic farming has been practiced for &lt;a href="http://en.wikipedia.org/wiki/History_of_organic_farming" target="_blank"&gt;thousands of years&lt;/a&gt;, but I think you could easily reject that claim - ancient farmers&amp;nbsp;didn't use pesticides and other modern farming techniques because they simply weren't available. The term "organic farming" wasn't coined until&amp;nbsp;&lt;a href="http://en.wikipedia.org/wiki/Walter_James,_4th_Baron_Northbourne" target="_blank"&gt;1940&lt;/a&gt;, and&amp;nbsp;it was used to describe&amp;nbsp;a farm as an &lt;b&gt;&lt;i&gt;organism&lt;/i&gt;&lt;/b&gt;.&lt;br /&gt;
&lt;br /&gt;
The term "organic" in both cases was used because of the connection to a living organism, but that's about the only things they have in common. Organic (chemistry) was used to describe a family of chemical compounds while organic (food) was used to describe a type of farming that avoided "chemicals". Whether semantic drift is the cause for the confusion or the words were meant as homonyms from the start, one thing is clear: We're not saying the same thing.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;&lt;u&gt;Great, we mean different things. Now what?&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
I think it's obvious that organic farmers&lt;i style="font-weight: bold;"&gt;&amp;nbsp;are not&lt;/i&gt;&amp;nbsp;using the definition that chemists are, and vice versa. Organic farming is a technique that rejects modern techniques because the "chemical" treatments are either a potential health hazard or rob the fruits/vegetables of some nutrient. Instead of arguing about the word organic we should be refuting those claims. Specifically, I can think of two reasons why buying organic food doesn't make sense:&lt;br /&gt;
&lt;blockquote class="tr_bq"&gt;
1. &lt;a href="http://med.stanford.edu/ism/2012/september/organic.html" target="_blank"&gt;There's not much evidence of any health benefits from an organic diet&lt;/a&gt;.In fact, &lt;a href="http://www.ncbi.nlm.nih.gov/pubmed/17995860" target="_blank"&gt;there's not even evidence that organic food tastes any better&lt;/a&gt;, either.&lt;/blockquote&gt;
&lt;blockquote class="tr_bq"&gt;
2. The requirements for an "organic" label are&lt;a href="http://en.wikipedia.org/wiki/Organic_certification#Issues" target="_blank"&gt; easily manipulated&lt;/a&gt;, and you're probably not getting what you think you are when you buy organic foods.&lt;/blockquote&gt;
So maybe, just like with the word chemical, we should be focusing less on which words people are &lt;b&gt;&lt;i&gt;using&lt;/i&gt;&lt;/b&gt; and help them understand what they are really &lt;b&gt;&lt;i&gt;saying&lt;/i&gt;&lt;/b&gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;script async="" charset="utf-8" src="//platform.twitter.com/widgets.js"&gt;&lt;/script&gt;&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/bX5zd-qPH8U" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/5847393874777070539/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/03/what-does-organic-mean-anyway.html#comment-form" title="5 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/5847393874777070539?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/5847393874777070539?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/bX5zd-qPH8U/what-does-organic-mean-anyway.html" title="What does &quot;Organic&quot; mean, anyway?" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>5</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/03/what-does-organic-mean-anyway.html</feedburner:origLink></entry><entry gd:etag="W/&quot;AkIDQHg9eip7ImA9WhBQF04.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-3488091306509226796</id><published>2013-03-19T17:07:00.004-07:00</published><updated>2013-03-19T17:16:11.662-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-03-19T17:16:11.662-07:00</app:edited><category scheme="http://www.blogger.com/atom/ns#" term="Living with Chemicals" /><title>Living with chemicals: Retinal</title><content type="html">&lt;b&gt;The Chemical (IUPAC):&amp;nbsp;&lt;/b&gt;(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenal&lt;br /&gt;
&lt;b&gt;You probably know it as: &lt;/b&gt;Retinal&lt;br /&gt;
&lt;b&gt;The structure:&lt;/b&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;div style="text-align: center;"&gt;
&lt;img height="128" src="http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/All-trans-Retinal2.svg/2000px-All-trans-Retinal2.svg.png" width="400" /&gt;&lt;/div&gt;
&lt;br /&gt;
Last week I wrote about&amp;nbsp;&lt;a href="http://www.thecollapsedwavefunction.com/2013/03/living-with-chemicals-betacarotene.html" target="_blank"&gt;betacarotene, the chemical in carrots responsible for their orange color&lt;/a&gt;. I mentioned that although betacarotene was necessary vision, eating a ton of it won't give you supervision. As I said, betacarotene is converted to Vitamin A, which is converted to retinal. Retinal is a cool chemical with even cooler chemistry. You may know that in your eyes you have light receptors called rod cells, or "rods". These cells are responsible for low light vision.&amp;nbsp;&amp;nbsp;Your rods are so sensitive that in a perfectly dark room you would be able to detect a single photon! This is what &amp;nbsp;rod cell looks like:&lt;br /&gt;
&lt;br /&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;a href="http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Cone2.svg/1000px-Cone2.svg.png" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"&gt;&lt;img border="0" height="320" src="http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Cone2.svg/1000px-Cone2.svg.png" width="261" /&gt;&lt;/a&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both;"&gt;
You'll see that the outer segment has membrane shelves that are lined with rhodopsin. Rhodopsin is a protein containing 348 amino acids. Retinal sits wrapped neatly inside rhodpsin, bound to the amino acid lysine. In a completely dark room the retinal in your eyes will be in the&amp;nbsp;"11-cis" conformation. This is a bent conformation which allows retinal to fit inside rhodopsin. When a photon is absorbed by retinal it changes the conformation to the "all-trans" conformation, and retinal no longer fits inside or rhodopsin.&amp;nbsp;&lt;/div&gt;
&lt;div class="separator" style="clear: both;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both; text-align: center;"&gt;
&lt;img src="http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/RetinalCisandTrans.svg/500px-RetinalCisandTrans.svg.png" /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div class="separator" style="clear: both;"&gt;
Rhodopsin then unravels and this sets off a cascade of chemical reactions that end with a signal being sent to the brain. What's even more amazing is how well we understand that cascade. But that's a story for a different day...&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/Uowv_Rf7hH4" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/3488091306509226796/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/03/living-with-chemicals-retinal.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3488091306509226796?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3488091306509226796?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/Uowv_Rf7hH4/living-with-chemicals-retinal.html" title="Living with chemicals: Retinal" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/03/living-with-chemicals-retinal.html</feedburner:origLink></entry><entry gd:etag="W/&quot;C04MQXs5fip7ImA9WhBQE00.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-3354870076840831738</id><published>2013-03-14T15:59:00.000-07:00</published><updated>2013-03-14T15:59:40.526-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-03-14T15:59:40.526-07:00</app:edited><title>Science Myths and Misconceptions - Part IV: Gravity in Space</title><content type="html">&lt;b&gt;&lt;u&gt;&lt;span style="font-size: large;"&gt;#4 - There is no gravity in space&lt;/span&gt;&lt;/u&gt;&lt;/b&gt;&lt;br /&gt;
&lt;div&gt;
A common view of space is that it is a gravity free zone. I can understand where the confusion comes from (we do call it &lt;i style="font-weight: bold;"&gt;zero&lt;/i&gt;&amp;nbsp;gravity, after all), but there is actually a lot of gravity in space. Gravity is the reason the moon orbits the earth, the earth orbits the sun, and the sun orbits around the center of the galaxy. Gravity is a force that any object with mass will create. We're most familiar with the gravity on earth, but even a small object (like you) will have an attractive force (you can read more about that &lt;a href="http://www.thecollapsedwavefunction.com/2013/02/attractive-forces-of-nature-part-i.html" target="_blank"&gt;here&lt;/a&gt;).&lt;br /&gt;
&lt;br /&gt;
&lt;a href="http://i.space.com/images/i/000/026/763/original/860610_570433219641086_1814405276_o.jpg?1362437544" imageanchor="1" style="clear: right; float: right; margin-bottom: 1em; margin-left: 1em;"&gt;&lt;img border="0" height="212" src="http://i.space.com/images/i/000/026/763/original/860610_570433219641086_1814405276_o.jpg?1362437544" width="320" /&gt;&lt;/a&gt;For an example of what "zero gravity" really is, let's look at Commander Chris Hadfield. Commander Hadfield has been on the International Space Station since December 21st, 2012. For those of you who aren't familiar with Hadfield's internet fame he's had a &lt;a href="http://www.space.com/19673-star-trek-chris-hadfield-william-shatner-photos.html" target="_blank"&gt;twitter conversation with Captain Kirk&lt;/a&gt;, &lt;a href="http://www.reddit.com/r/IAmA/comments/18pik4/i_am_astronaut_chris_hadfield_currently_orbiting/" target="_blank"&gt;given Reddit the best AMA of all time&lt;/a&gt;, and&lt;a href="https://twitter.com/Cmdr_Hadfield" target="_blank"&gt; shared some amazing pictures&lt;/a&gt;. Now, why hasn't the ISS fallen from the sky in that time? Certainly&amp;nbsp;if there were any gravity at all the entire station would come crashing down, right? The answer, which you already knew, is that the ISS is orbiting the earth. But what does it really mean to orbit?&lt;br /&gt;
&lt;br /&gt;
Saying that the ISS is orbiting the earth is really just a fancy way of saying it's falling to the earth but hasn't gotten there yet. The ISS is traveling with a velocity horizontal to the earth of ~17,500 mph (Imagine a point 5 miles away from you. Traveling as fast as the ISS you'd be there in just over a second!). Commander Hadfield doesn't feel like he's moving at that speed though - he's falling to the earth at the same rate that the space station is so he feels weightless.&lt;br /&gt;
&lt;br /&gt;
Here's a video of Commander Hadfield washing his hands in space:&lt;/div&gt;
&lt;iframe allowfullscreen="" frameborder="0" height="360" src="http://www.youtube.com/embed/JUUvlnnVMSQ?feature=player_detailpage" width="640"&gt;&lt;/iframe&gt;&lt;br /&gt;
&lt;br /&gt;
You can see &lt;a href="http://www.thecollapsedwavefunction.com/search/label/Science%20Myths%20and%20Misconceptions" target="_blank"&gt;the rest of the the Science Myths and Misconceptions here&lt;/a&gt;!&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/FwA4ze6yWnA" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/3354870076840831738/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/03/science-myths-and-misconceptions-part.html#comment-form" title="0 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3354870076840831738?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3354870076840831738?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/FwA4ze6yWnA/science-myths-and-misconceptions-part.html" title="Science Myths and Misconceptions - Part IV: Gravity in Space" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://img.youtube.com/vi/JUUvlnnVMSQ/default.jpg" height="72" width="72" /><thr:total>0</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/03/science-myths-and-misconceptions-part.html</feedburner:origLink></entry><entry gd:etag="W/&quot;D0cFQ3Y_fip7ImA9WhBQEUg.&quot;"><id>tag:blogger.com,1999:blog-3456390557455246185.post-3213165770312241215</id><published>2013-03-12T22:38:00.000-07:00</published><updated>2013-03-12T23:10:12.846-07:00</updated><app:edited xmlns:app="http://www.w3.org/2007/app">2013-03-12T23:10:12.846-07:00</app:edited><title>Chemistry and Cooking</title><content type="html">&lt;div style="text-align: center;"&gt;
&lt;span style="font-size: large;"&gt;&lt;i&gt;"Chemistry is just like cooking, except you can't lick the spoon!"&lt;/i&gt;&lt;/span&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;span style="font-size: large;"&gt;&lt;i&gt;&lt;br /&gt;&lt;/i&gt;&lt;/span&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
By training I'm a chemist, though what I do in the lab is far what most people imagine when they think of a chemist. When I say I'm a chemist, I'm sure most people imagine the mad scientist surrounded by glassware, odd colored liquids, and smoking test tubes (come to think of it, this is how I imagine organic chemists!). But the chemistry I do doesn't involve any of those things. I don't wear a lab coat, gloves, or safety goggles (though I do wear laser glasses). I haven't even synthesized anything in a lab in over 3 years. I think part of me misses that, which is why I find it very relaxing to cook.&amp;nbsp;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
I don't like to follow a recipe, though. I cook in the style of "a dash of this" and "a pinch of that". If my wife really likes something I've cooked she knows to enjoy the moment because she'll never have that exact dish again. That's not to say my wife doesn't like my cooking, she just knows that every meal will be different.&amp;nbsp;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
Usually when I'm cooking my mind turns to chemistry. In particular I've been thinking of the Maillard reaction. Though you may not have heard it of it before, I'm sure you've seen it. Just take a look at this amazing piece of chicken I fried up tonight:&amp;nbsp;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;table align="center" cellpadding="0" cellspacing="0" class="tr-caption-container" style="margin-left: auto; margin-right: auto; text-align: center;"&gt;&lt;tbody&gt;
&lt;tr&gt;&lt;td style="text-align: center;"&gt;&lt;a href="http://1.bp.blogspot.com/-5RMtm85-aPk/UUAAFugCoOI/AAAAAAAAbiE/w5kdBEKDGzc/s1600/IMG_20130312_181524.jpg" imageanchor="1" style="margin-left: auto; margin-right: auto;"&gt;&lt;img border="0" height="480" src="http://1.bp.blogspot.com/-5RMtm85-aPk/UUAAFugCoOI/AAAAAAAAbiE/w5kdBEKDGzc/s640/IMG_20130312_181524.jpg" width="640" /&gt;&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class="tr-caption" style="text-align: center;"&gt;Ok, so maybe I wrote this as an excuse to post this picture. At least I haven't added a filter or something...&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;div style="text-align: left;"&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: left;"&gt;
The browning on the outside of the chicken is due to the Maillard reaction, which happens when amino acids react with sugar in the presence of heat. You'll see it in toast, roasted coffee, maple syrup, caramels, and much more. From that list I'm sure you'll agree that the reaction can create a wide variety of taste. Understanding and utilizing the reaction is the basis of the food industry.&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;b&gt;&lt;span style="font-size: large;"&gt;*(Warning)*&lt;/span&gt;&lt;/b&gt;&lt;/div&gt;
&lt;div style="text-align: center;"&gt;
&lt;i&gt;The following paragraph is written by a physical chemist. Like I said I haven't done "real" chemistry in years.&lt;/i&gt;&lt;/div&gt;
&lt;br /&gt;
The process occurs in three stages. First, the carbonyl group of a sugar reacts with an amino acid to produce water and glycosylamine. Then, the glycosylamine pushes a hydrogen around (which is my simplistic - and wrong - way of describing an Amadori rearrangement, but I'll admit it I had to look that up) to produce a variety of aminoketones. In the final step a host of other products are produced depending on the pH, the temperature, and amino acids involved. These different products are why the Maillard reaction creates such a wide variety of tastes.&lt;br /&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
So my question to other chemists that read this is - do you enjoy cooking? For you synthetic chemists, does it feel too much like work to be enjoyable? Let me know in the comments!&lt;/div&gt;
&lt;img src="http://feeds.feedburner.com/~r/TheCollapsedWavefunction/~4/TO9uIW0tj1Q" height="1" width="1"/&gt;</content><link rel="replies" type="application/atom+xml" href="http://www.thecollapsedwavefunction.com/feeds/3213165770312241215/comments/default" title="Post Comments" /><link rel="replies" type="text/html" href="http://www.thecollapsedwavefunction.com/2013/03/chemistry-and-cooking.html#comment-form" title="6 Comments" /><link rel="edit" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3213165770312241215?v=2" /><link rel="self" type="application/atom+xml" href="http://www.blogger.com/feeds/3456390557455246185/posts/default/3213165770312241215?v=2" /><link rel="alternate" type="text/html" href="http://feedproxy.google.com/~r/TheCollapsedWavefunction/~3/TO9uIW0tj1Q/chemistry-and-cooking.html" title="Chemistry and Cooking" /><author><name>Chad Jones</name><uri>https://plus.google.com/115397862759047567153</uri><email>noreply@blogger.com</email><gd:image rel="http://schemas.google.com/g/2005#thumbnail" width="32" height="32" src="//lh6.googleusercontent.com/-yObKynfFMUU/AAAAAAAAAAI/AAAAAAAAbZI/Gur7-oKjaXk/s512-c/photo.jpg" /></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="http://1.bp.blogspot.com/-5RMtm85-aPk/UUAAFugCoOI/AAAAAAAAbiE/w5kdBEKDGzc/s72-c/IMG_20130312_181524.jpg" height="72" width="72" /><thr:total>6</thr:total><gd:extendedProperty name="commentSource" value="1" /><gd:extendedProperty name="commentModerationMode" value="FILTERED_POSTMOD" /><feedburner:origLink>http://www.thecollapsedwavefunction.com/2013/03/chemistry-and-cooking.html</feedburner:origLink></entry></feed>
