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		<title>www.cancer-genetics.com</title>
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		<title>Bloggers-Wikians meeting during ESHG 2011</title>
		<link>https://cancergenetics.wordpress.com/2011/05/26/bloggers-wikians-meeting-during-eshg-2011/</link>
					<comments>https://cancergenetics.wordpress.com/2011/05/26/bloggers-wikians-meeting-during-eshg-2011/#comments</comments>
		
		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Thu, 26 May 2011 16:05:56 +0000</pubDate>
				<category><![CDATA[media]]></category>
		<category><![CDATA[personal]]></category>
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					<description><![CDATA[For all those &#8220;dna-wiki-blogs&#8221; savvy folks, who will be apparently visiting European Society of Human Genetics (ESHG) annual meeting from this saturday in Amsterdam, the Netherlands, and get to the opening welcome reception at Amsterdam RAI on Saturday, 28th, 20 p.m., this DNA-shadowy man (bellow) on the one of the table should guide to the [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>For all those &#8220;dna-wiki-blogs&#8221; savvy folks, who will be apparently visiting European Society of Human Genetics (ESHG) annual meeting from this saturday in Amsterdam, the Netherlands, and get to the opening welcome reception at <a href="http://www.rai.nl">Amsterdam RAI</a> on Saturday, 28th, 20 p.m., this DNA-<a href="http://www.youtube.com/watch?v=ebHfMRw--sE">shadowy man</a> (bellow) on the one of the table should guide to the proper location, where Mike (from <a href="http://www.snpedia.org">SNPedia.org</a> and I will held an informal meeting of &lt;bloggers&gt;, [wiki&#8217;ans] etc <img src="https://s0.wp.com/wp-content/mu-plugins/wpcom-smileys/twemoji/2/72x72/1f642.png" alt="🙂" class="wp-smiley" style="height: 1em; max-height: 1em;" /> See you there! (amplificate this)<br />
<a href="https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png"><img data-attachment-id="315" data-permalink="https://cancergenetics.wordpress.com/2011/05/26/bloggers-wikians-meeting-during-eshg-2011/blog_wikidna3/" data-orig-file="https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png" data-orig-size="800,600" data-comments-opened="1" data-image-meta="{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;}" data-image-title="blog_wikiDNA3" data-image-description="" data-image-caption="" data-medium-file="https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png?w=300" data-large-file="https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png?w=460" class="size-medium wp-image-315 aligncenter" title="blog_wikiDNA3" src="https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png?w=300&#038;h=224" alt=""   srcset="https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png?w=300 300w, https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png?w=349 349w, https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png?w=698 698w, https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/blog_wikidna3.png?w=150 150w" sizes="(max-width: 349px) 100vw, 349px" /></a></p>
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		<post-id xmlns="com-wordpress:feed-additions:1">312</post-id>
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			<media:title type="html">ramunas</media:title>
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		<title>Scientific tourism on the road</title>
		<link>https://cancergenetics.wordpress.com/2011/05/22/scientific-tourism-on-the-road/</link>
					<comments>https://cancergenetics.wordpress.com/2011/05/22/scientific-tourism-on-the-road/#comments</comments>
		
		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Sat, 21 May 2011 22:27:37 +0000</pubDate>
				<category><![CDATA[cancer genetics]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=296</guid>

					<description><![CDATA[Last week I had an opportunity to visit two important events related to my professional interests. One was held in Bristol (UK) &#8211; Cancer Genetics Meeting, where I presented a poster on recently developed new method for Lynch syndrome and MSI screening. The second one was in Berlin (DE) &#8211; 2nd Congress of European society [&#8230;]]]></description>
										<content:encoded><![CDATA[<p><img alt="" src="https://i0.wp.com/www.cotswolds.info/images/bristol/planetarium.jpg" title="Bristol planetarium" class="alignleft" width="290" height="200" /> Last week I had an opportunity to visit two important events related to my professional interests. One was held in Bristol (UK) &#8211; <a href="http://www.bshg.org.uk/Registration_CGG_2011.pdf">Cancer Genetics Meeting</a>, where I presented a poster on recently developed <a href="http://www.ncbi.nlm.nih.gov/pubmed/20852132">new method for Lynch syndrome and MSI screening</a>.<br />
<img alt="" src="https://i0.wp.com/www.zafiris.net/images/Berlin2004/1444BerlinModernSculpture.jpg" title="Modern sculpture in Berlin" class="alignleft" width="290" height="200" />The second one was in Berlin (DE) &#8211; <a href="http://www.euspm.org/2ndMeeting.php">2nd Congress of European society of Predictive Medicine</a>, where i was invited to give a talk about founder BRCA1/2 mutations in the Europe.<br />
After somehow unexpected loss of my prepared presentation, there was a very productive brainstorm all way back in coach to London, there (thanks to <a href="http://www.pret.com/">Pret-A-Manger</a> free internet hotspots) and the airport. Since there was interest in my review, now <a href='https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/brca12_review2010_online.pdf'>anyone can dowload it here</a>.<br />
And in the next week there will be big <a href="https://www.eshg.org/eshg2011.0.html">European Society of Human Genetic meeting</a> in Amsterdam (NL), where i will present a case in oncogenetic meeting (soon there will be separate post about ESHG). A very informative scientific guide on &#8220;<a href='https://cancergenetics.wordpress.com/wp-content/uploads/2011/05/howbritish_dutchcommunicate.pdf'>&#8220;How the British and the Dutch Communicate&#8221;</a>&#8221; highlights some important aspects for successful understanding of some evident peculiarities in these two nations <img src="https://s0.wp.com/wp-content/mu-plugins/wpcom-smileys/twemoji/2/72x72/1f642.png" alt="🙂" class="wp-smiley" style="height: 1em; max-height: 1em;" /><br />
From Amsterdam I have plans to enjoy Dutch way of travelling and cycle with my folding Brompton down to Brussels, Belgium. If anyone have something suggest to visit on the way &#8211; is welcome to share.</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">296</post-id>
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			<media:title type="html">ramunas</media:title>
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			<media:title type="html">Bristol planetarium</media:title>
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			<media:title type="html">Modern sculpture in Berlin</media:title>
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		<title>My Genome (scan), My Life</title>
		<link>https://cancergenetics.wordpress.com/2011/04/13/my-genome-scan-my-life/</link>
					<comments>https://cancergenetics.wordpress.com/2011/04/13/my-genome-scan-my-life/#comments</comments>
		
		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Wed, 13 Apr 2011 05:25:59 +0000</pubDate>
				<category><![CDATA[cancer genetics]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=284</guid>

					<description><![CDATA[Today is a good day. I can not imagine a better day than personal birthday (and forthcoming DNA Day) to share my personal genome scan information, which you can find in the cloudy GitHub HERE* [GenomeScan_RJv2]. This is quite low density profile generated through 23andMe v.2 genotyping on Illumina Hap550+ array while a year ago. [&#8230;]]]></description>
										<content:encoded><![CDATA[<p><img loading="lazy" class="alignleft" title="genome" src="https://i0.wp.com/www.scientificamerican.com/media/inline/blog/Image/DNA-genome-personal.jpg" alt="" width="145" height="108" />Today is a good day. I can not imagine a better day than personal birthday (<a href="http://www.genome.gov/DNADay/">and forthcoming DNA Day</a>) to share my personal genome scan information, which you can find in the cloudy GitHub <a href="https://github.com/downloads/ramujana/Ramunas-J.-Genome-Scan/genome_Ramunas_J__Full_20100706134846.txt">HERE* [GenomeScan_RJv2]</a>.<br />
This is quite low density profile generated through 23andMe v.2 genotyping on Illumina Hap550+ array while a year ago.<br />
I would appreciate any insightful information anyone will find there <img src="https://s0.wp.com/wp-content/mu-plugins/wpcom-smileys/twemoji/2/72x72/1f642.png" alt="🙂" class="wp-smiley" style="height: 1em; max-height: 1em;" /></p>
<p><a rel="license" href="http://creativecommons.org/licenses/by-nc-nd/3.0/"><img alt="Creative Commons licenzija" style="border-width:0;" src="https://i0.wp.com/i.creativecommons.org/l/by-nc-nd/3.0/88x31.png" /></a><br />*This information is shared under  <a rel="license" href="http://creativecommons.org/licenses/by-nc-nd/3.0/">Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported license</a>.</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">284</post-id>
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			<media:title type="html">ramunas</media:title>
		</media:content>

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			<media:title type="html">genome</media:title>
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			<media:title type="html">Creative Commons licenzija</media:title>
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		<title>Positive book for all with positive results</title>
		<link>https://cancergenetics.wordpress.com/2011/04/09/positive-book-for-all-with-positive-results/</link>
					<comments>https://cancergenetics.wordpress.com/2011/04/09/positive-book-for-all-with-positive-results/#respond</comments>
		
		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Sat, 09 Apr 2011 08:28:54 +0000</pubDate>
				<category><![CDATA[BRCA]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer genetics]]></category>
		<category><![CDATA[genetic testing]]></category>
		<category><![CDATA[hereditary cancer]]></category>
		<category><![CDATA[ovarian cancer]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=276</guid>

					<description><![CDATA[An amazing book written by BRCA2 positive cancer survivor and clinical geneticist: &#8220;Positive Results: Making the Best Decisions When You&#8217;re at High Risk for Breast or Ovarian Cancer&#8221;,which is now in my hands and hungry eyes. This is very informative and up-to-date single reference for all (women and men) who are at increased genetic risk [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>An amazing book wri<img loading="lazy" class="alignleft" title="pos" src="https://i0.wp.com/www.facingourrisk.org/how_to_help/store/images/book_positive_results_480px.jpg" alt="" width="139" height="209" />tten by BRCA2 positive cancer survivor and clinical  geneticist: <a href="http://positiveresultsthebook.com/" target="_blank">&#8220;Positive Results: Making the Best Decisions When You&#8217;re at  High Risk for Breast or Ovarian Cancer&#8221;</a>,which is now in my hands and hungry  eyes.</p>
<p>This is very informative and up-to-date single reference for all  (women and men) who are at increased genetic risk due to BRCA1/2  mutations, as well as clinicians dealing with these patients.</p>
<p>This  source i&#8217;ll definitely now include in my recommendations for high risk  women, along with <a href="http://www.facingourrisk.org/" target="_blank">FORCE </a>and a free gift of <a href="http://www.liv.com/" target="_blank">Liv Breast Self-Exam Kit </a>kindly provided by <a href="http://www.pvas.lt" target="_blank">Association for Hereditary Cancer (PVAS)</a>.</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">276</post-id>
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			<media:title type="html">ramunas</media:title>
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		<title>Founder BRCA1/2 mutations in the Europe: The Netherlands (Holland)</title>
		<link>https://cancergenetics.wordpress.com/2010/08/09/home-about-diagnostic-criteria-genetic-testing-management-research-patients-group-jump-to-navigation-founder-brca12-mutations-in-the-europe-the-netherlan/</link>
					<comments>https://cancergenetics.wordpress.com/2010/08/09/home-about-diagnostic-criteria-genetic-testing-management-research-patients-group-jump-to-navigation-founder-brca12-mutations-in-the-europe-the-netherlan/#comments</comments>
		
		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Mon, 09 Aug 2010 15:59:55 +0000</pubDate>
				<category><![CDATA[BRCA]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer genetics]]></category>
		<category><![CDATA[genetic testing]]></category>
		<category><![CDATA[ovarian cancer]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=270</guid>

					<description><![CDATA[Several founder mutations in BRCA1/2 have been identified in Holland [94], where significant regional and cultural differences exist. The BRCA1 c.2685_2686delAA (BIC: 2804delAA) founder mutation probably originated approximately 32 generations (∼200 years) ago, was also reported few times in Belgium and accounted for 24% of all BRCA1/2 mutations [92]. BRCA1 c.2193del5 (BIC: 2312del5), and c.1292dupT (BIC: [&#8230;]]]></description>
										<content:encoded><![CDATA[<blockquote><p>Several founder mutations in <em>BRCA1/2</em> have been identified in Holland [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR94">94</a></cite>], where significant regional and cultural differences exist. The <em>BRCA1</em> c.2685_2686delAA (BIC: 2804delAA) founder mutation probably originated approximately 32 generations (∼200 years) ago, was                   also reported few times in Belgium and accounted for 24% of all <em>BRCA1/2</em> mutations [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR92">92</a></cite>]. <em>BRCA1</em> c.2193del5 (BIC: 2312del5), and c.1292dupT (BIC: 1411insT) mutations were also commonly found [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR92">92</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR94">94</a></cite>].</p>
<p>In the south-west of Holland two founder mutations: 3.8-kb deletion of <em>BRCA1</em> exon 13, also known as c.4186-1643_4357+2020del3835 (BIC: del exon 13del3835/IVS12-1643del3835), and <em>BRCA2</em> c.5351dupA (BIC: 5579insA) were found in families from two different  geographical areas, and were prevalent respectively                   in Catholic (West Braband clustering) and Protestant  (South Beveland clustering) families, reflecting religious endogamy [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR95">95</a></cite>]. Together with another Dutch <em>BRCA2</em> founder mutation c.6275_6276delTT (BIC: 6503delTT), c.5351dupA accounts for 62% of hereditary breast/ovarian families [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR94">94</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR95">95</a></cite>].</p>
<p>Slightly outdated (as of year 2002) list of published and unpublished <em>BRCA1/2</em> mutations in Netherlands and Belgium can be found at <a href="http://www.humgen.nl/lab-devilee/Lab/b1nlmuts.htm">http://www.humgen.nl/lab-devilee/Lab/b1nlmuts.htm</a>.</p>
<p>Large genomic rearrangements (LGRs) in <em>BRCA1</em> gene are surprisingly common in Dutch population and more than 30% of the <em>BRCA1</em> related cases of hereditary breast cancer are due to copy number  changes of one or more exon in this gene. The majority of                   these (25%) are due to two frequently occurring  founder mutations: already described 3.8-kb deletion of exon 13 or  510-bp                   deletion of exon 22 [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR96">96</a></cite>], which can be easily detected by <a href="http://www.mlpa.com" target="_blank">multiplex-ligation dependent probe amplification (MLPA) </a>method.</p></blockquote>
<p>My full review article: Janavicius R. <a href="http://www.springerlink.com/content/e823p38j11v66763/?p=2489fceed4384a9fbd3ba5950f065df0&amp;pi=8">Founder   <em>BRCA1/2</em> mutations in the Europe: implications for hereditary   breast-ovarian cancer prevention and control</a></p>
<p>TBC</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">270</post-id>
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			<media:title type="html">ramunas</media:title>
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		<title>Founder BRCA1/2 mutations in the Europe: Belgium</title>
		<link>https://cancergenetics.wordpress.com/2010/08/07/founder-brca12-mutations-in-the-europe-belgium/</link>
					<comments>https://cancergenetics.wordpress.com/2010/08/07/founder-brca12-mutations-in-the-europe-belgium/#comments</comments>
		
		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Sat, 07 Aug 2010 20:19:02 +0000</pubDate>
				<category><![CDATA[BRCA]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer genetics]]></category>
		<category><![CDATA[genetic testing]]></category>
		<category><![CDATA[hereditary cancer]]></category>
		<category><![CDATA[ovarian cancer]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=267</guid>

					<description><![CDATA[Claes et al. [91] in a 49 BRCA1/2 positive families found six major recurrent founder mutations (three BRCA1 c.212+3A&#62; (BIC: IVS5+3A&#62;G), c.2359dupG (BIC: 2478insG), c.3661G&#62;T (BIC: 3780G&#62;T) and three BRCA2 c.516+1G&#62;A (BIC: IVS6+1G&#62;A), c.6275_6276delTT (BIC: 6503_6504delTT), c.8904delC (BIC: 9132delC) alterations), which accounted for nearly 60% of all mutations identified. BRCA1 c.212+3A&#62;G was previously reported as [&#8230;]]]></description>
										<content:encoded><![CDATA[<blockquote><p>Claes et al. [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR91">91</a></cite>] in a 49 <em>BRCA1/2</em> positive families found six major recurrent founder mutations (three <em>BRCA1</em> c.212+3A&gt; (BIC: IVS5+3A&gt;G), c.2359dupG (BIC: 2478insG), c.3661G&gt;T (BIC: 3780G&gt;T) and three <em>BRCA2</em> c.516+1G&gt;A (BIC: IVS6+1G&gt;A), c.6275_6276delTT (BIC:  6503_6504delTT), c.8904delC (BIC: 9132delC) alterations), which  accounted                   for nearly 60% of all mutations identified. <em>BRCA1</em> c.212+3A&gt;G was previously reported as Belgian founder mutation [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR92">92</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR93">93</a></cite>], later also found in a few German, Dutch and French families [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR91">91</a></cite>]. <em>BRCA1</em> c.2359dupG and <em>BRCA2</em> c.516+1G&gt;A have not yet been reported in other populations.</p></blockquote>
<p>My full review article: Janavicius R. <a href="http://www.springerlink.com/content/e823p38j11v66763/?p=2489fceed4384a9fbd3ba5950f065df0&amp;pi=8">Founder   <em>BRCA1/2</em> mutations in the Europe: implications for hereditary   breast-ovarian cancer prevention and control</a></p>
<p>TBC</p>
]]></content:encoded>
					
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		<post-id xmlns="com-wordpress:feed-additions:1">267</post-id>
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			<media:title type="html">ramunas</media:title>
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		<title>Founder BRCA1/2 mutations in the Europe: Portugal</title>
		<link>https://cancergenetics.wordpress.com/2010/08/06/founder-brca12-mutations-in-the-europe-portugal/</link>
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		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Fri, 06 Aug 2010 20:17:24 +0000</pubDate>
				<category><![CDATA[BRCA]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer genetics]]></category>
		<category><![CDATA[genetic testing]]></category>
		<category><![CDATA[hereditary cancer]]></category>
		<category><![CDATA[ovarian cancer]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=264</guid>

					<description><![CDATA[An Alu sequence insertion in BRCA2 exon 3 (c.156_157insAlu (BIC: 384insAlu)) is a founder mutation of Portuguese origin and accounts for more than one-fourth of deleterious BRCA1/2 mutations in breast/ovarian cancer families in Northern/Central Portugal. This mutation creates BRCA2 exon 3 skipping and is the most frequent large BRCA2 rearrangement described to date [89, 90]. [&#8230;]]]></description>
										<content:encoded><![CDATA[<blockquote><p>An <em>Alu</em> sequence insertion in <em>BRCA2</em> exon 3 (c.156_157insAlu (BIC: 384insAlu)) is a founder mutation of Portuguese origin and accounts for more than one-fourth                   of deleterious <em>BRCA1/2</em> mutations in breast/ovarian cancer families in Northern/Central Portugal. This mutation creates <em>BRCA2</em> exon 3 skipping and is the most frequent large <em>BRCA2</em> rearrangement described to date [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR89">89</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR90">90</a></cite>].</p></blockquote>
<p>My full review article: Janavicius R. <a href="http://www.springerlink.com/content/e823p38j11v66763/?p=2489fceed4384a9fbd3ba5950f065df0&amp;pi=8">Founder   <em>BRCA1/2</em> mutations in the Europe: implications for hereditary   breast-ovarian cancer prevention and control</a></p>
<p>TBC</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">264</post-id>
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		<title>Founder BRCA1/2 mutations in the Europe: Spain</title>
		<link>https://cancergenetics.wordpress.com/2010/08/05/founder-brca12-mutations-in-the-europe-spain/</link>
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		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Thu, 05 Aug 2010 20:14:43 +0000</pubDate>
				<category><![CDATA[BRCA]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer genetics]]></category>
		<category><![CDATA[genetic testing]]></category>
		<category><![CDATA[hereditary cancer]]></category>
		<category><![CDATA[ovarian cancer]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=262</guid>

					<description><![CDATA[In Spain, five mutations in BRCA1 and other five in BRCA2 genes account for approximately half of the mutations detected in Spanish families. Specific mutations differ significantly in their frequencies and geographic distribution. A compilation of BRCA test results from different laboratories shows that five mutations in the BRCA1 gene (c.68_69delAG, c.211A&#62;G (BIC: 330A&#62;G), c.5117G&#62;A [&#8230;]]]></description>
										<content:encoded><![CDATA[<blockquote><p>In Spain, five mutations in <em>BRCA1</em> and other five in <em>BRCA2</em> genes account for approximately half of the mutations detected in Spanish families. Specific mutations differ significantly                   in their frequencies and geographic distribution.</p>
<p>A compilation of <em>BRCA</em> test results from different laboratories shows that five mutations in the <em>BRCA1</em> gene (c.68_69delAG, c.211A&gt;G (BIC: 330A&gt;G), c.5117G&gt;A (BIC:  5236G&gt;A), c.5123C&gt;A (BIC: 5242C&gt;A), c.470_471delCT (BIC:  589_590delCT)                   account for 46.6% of <em>BRCA1</em> mutations and four mutations in <em>BRCA2</em> (c.2808_2811del4 (BIC: 3036_3039del4), c.6629_6630delAA (BIC:  c.6857delAA), c.9026_9030del5 (BIC: 9254-9258del5), c.9310_9311delAA                   (BIC: 9538delAA)) account for 56.6% of the <em>BRCA2</em> mutations [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR79">79</a></cite>].</p>
<p>Diez et al., [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR80">80</a></cite>] have reviewed the frequency of <em>BRCA1</em> and <em>BRCA2</em> recurrent mutations reported in seven geographic areas of Spain.</p>
<p>The founder mutation <em>BRCA1</em> c.211A&gt;G, that leads to aberrant splicing of the transcript, originates from North Western Spain (Galicia) and accounts up                   to 50% of all mutations in this region [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR81">81</a></cite>]. It was also found in French and British families of Spanish origin [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR82">82</a></cite>].</p>
<p>The <em>BRCA1</em> c.68_69delAG and <em>BRCA2</em> c.9026_9030del5 mutations accounted for the 30.4% (7/23) of the <em>BRCA1</em> mutations and for the 18.5% (5/27) of the <em>BRCA2</em> positive families respectively and were specific only to the Mediterranean areas. Indeed, haplotype studies indicated a common                   origin of c.68_69delAG mutation in Spanish (Sephardic Jewish) and Ashkenazi Jewish populations [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR83">83</a></cite>]. Some data indicate an unique origin of reported <em>BRCA2</em> exon 23 mutation <em>BRCA2</em> c.9026_9030del5 in Catalan families (North-East Spain) [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR84">84</a></cite>]. Likewise, the <em>BRCA2</em> c.2808_2811del4 mutation was predominant only in the Castilla-Leon  region (Central Spain), but it also has been described                   worldwide in many populations and is the second  recurrent pathological mutation in the BIC database ranking with a  presumable                   multiple different origins [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR85">85</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR86">86</a></cite>].</p>
<p>Splicing mutation c.5153-1G<em>&gt;</em>A (BIC: 5272-1G&gt;A) of <em>BRCA1</em> and frameshift mutation c.5146_5149del4 (BIC: 5374delTATG) of <em>BRCA2</em> are also prevalent founder mutations in the Central Spain region, accounting for 18.4% and 13.6% of <em>BRCA1</em> and <em>BRCA2</em> positive families, respectively [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR80">80</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR85">85</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR87">87</a></cite>]. Such knowledge of the spectrum of mutations and their geographical distribution can allow a more effective detection strategy                   in countries with large Spanish population.</p>
<p>Conversely, in the Basque population, only 1.2% (1/81) of early onset breast cancer women unselected for family history had                   pathological mutations; no founder mutation was identified [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR88">88</a></cite>].</p></blockquote>
<p>My full review article: Janavicius R. <a href="http://www.springerlink.com/content/e823p38j11v66763/?p=2489fceed4384a9fbd3ba5950f065df0&amp;pi=8">Founder   <em>BRCA1/2</em> mutations in the Europe: implications for hereditary   breast-ovarian cancer prevention and control</a></p>
<p>TBC</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">262</post-id>
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			<media:title type="html">ramunas</media:title>
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		<title>Founder BRCA1/2 mutations in the Europe: France</title>
		<link>https://cancergenetics.wordpress.com/2010/08/04/founder-brca12-mutations-in-the-europe-france/</link>
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		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Wed, 04 Aug 2010 20:14:31 +0000</pubDate>
				<category><![CDATA[BRCA]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer genetics]]></category>
		<category><![CDATA[genetic testing]]></category>
		<category><![CDATA[hereditary cancer]]></category>
		<category><![CDATA[ovarian cancer]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=260</guid>

					<description><![CDATA[In France geographical clustering in North-Eastern part is evident for two recurrent BRCA1 mutations, suggesting a founder effect. The c.3481_3491del11 (BIC: 3600del11) in exon 11 accounts for 37% and the nonsense mutation c.5128G&#62;T (BIC: 5247G&#62;T/Gly1710X) in exon 18 for 15% of all BRCA1/2 mutations in that region (overall 52%) [4, 75]. The haplotype analysis of [&#8230;]]]></description>
										<content:encoded><![CDATA[<blockquote><p>In France geographical clustering in North-Eastern part is evident for two recurrent <em>BRCA1</em> mutations, suggesting a founder effect. The c.3481_3491del11 (BIC: 3600del11) in exon 11 accounts for 37% and the nonsense                   mutation c.5128G&gt;T (BIC: 5247G&gt;T/Gly1710X) in exon 18 for 15% of all <em>BRCA1/2</em> mutations in that region (overall 52%) [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR4">4</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR75">75</a></cite>].</p>
<p>The haplotype analysis of the families carrying the mutation c.3481_3491del11, all originating from Alsace–Lorraine, revealed                   the presence of a common allele, indicating a founder effect [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR75">75</a></cite>]. Although this mutation is found in many different geographical areas, it is more common in France. The <em>BRCA1</em> mutation c.5128G&gt;T would appear to be specific to the France, but the analysis of its haplotype is less conclusive and needs                   further confirmation [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR6">6</a></cite>].</p>
<p>The <em>BRCA1</em> c.5030_5033delCTAA (BIC: 5149delCTAA) [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR76">76</a></cite>] and c.3839_3843delinsAGGC (BIC: 3958delCTCAGinsAGGC) [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR77">77</a></cite>] mutations were reported in at least three independent families from France.</p>
<p>Well-described founder mutations are identified in French-Canadians population in Quebec, which originated from France during                   17–18th century settlement period. In this region 4 <em>BRCA1</em> gene mutations (c.4327C&gt;T (BIC: 4446C&gt;T/Arg1443X),  c.3756_3759del4 (BIC: 3875delGTCT), c.962G&gt;A (BIC: 1081G&gt;A),  c.2834_2836delinsC                   (BIC: 2953delGTA/insC) and 3 <em>BRCA2</em> mutations  (c.3170_3174del5 (BIC: 3398del5), c.5857G&gt;T (BIC: 6085G&gt;T),  c.8537_8538delAG (BIC: 8765delAG)) are now routinely                   included in early onset breast/ovarian cancer  screening assays and represent up to 84% of the total <em>BRCA1/2</em> mutations in the French-Canadian population in Quebec [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR78">78</a></cite>]. Among these, the most common founder mutations are <em>BRCA1</em> c.4327C&gt;T and BRCA2 c.8537_8538delAG and c.3170_3174del5, which are  found in 1.7% of women affected by breast cancer diagnosed                   before age 41 and in 1.3% of women with ovarian cancer  [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR6">6</a></cite>].</p></blockquote>
<p>My full review article: Janavicius R. <a href="http://www.springerlink.com/content/e823p38j11v66763/?p=2489fceed4384a9fbd3ba5950f065df0&amp;pi=8">Founder   <em>BRCA1/2</em> mutations in the Europe: implications for hereditary   breast-ovarian cancer prevention and control</a></p>
<p>TBC</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">260</post-id>
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		<title>Founder BRCA1/2 mutations in the Europe: Italy</title>
		<link>https://cancergenetics.wordpress.com/2010/07/30/founder-brca12-mutations-in-the-europe-italy/</link>
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		<dc:creator><![CDATA[ramunas]]></dc:creator>
		<pubDate>Fri, 30 Jul 2010 19:42:16 +0000</pubDate>
				<category><![CDATA[BRCA]]></category>
		<category><![CDATA[breast cancer]]></category>
		<category><![CDATA[cancer genetics]]></category>
		<category><![CDATA[genetic testing]]></category>
		<category><![CDATA[hereditary cancer]]></category>
		<category><![CDATA[ovarian cancer]]></category>
		<guid isPermaLink="false">http://cancergenetics.wordpress.com/?p=254</guid>

					<description><![CDATA[In Italy, 4–27% of the identified mutations recurred among apparently unrelated families, and significant regional founder effect has been demonstrated for few mutations [63–66]. Four distinct BRCA1 founder mutations (c.3228_3229delAG (BIC: 3347delAG), c.3285delA (BIC: 3404delA), c.1380dupA (BIC: 1499insA), c.5062_5064del3 (BIC: 5181delGTT) accounted for a large fraction (73%) of BRCA1-attributable hereditary breast/ovarian cancer in families originating [&#8230;]]]></description>
										<content:encoded><![CDATA[<blockquote><p>In <a href="http://en.wikipedia.org/wiki/Italy" target="_blank">Italy</a>, 4–27% of the identified mutations recurred among apparently unrelated families, and significant regional founder                   effect has been demonstrated for few mutations [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR63">63</a></cite>–<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR66">66</a></cite>].</p>
<p>Four distinct <em>BRCA1</em> founder mutations (c.3228_3229delAG (BIC: 3347delAG), c.3285delA (BIC: 3404delA), c.1380dupA (BIC: 1499insA), c.5062_5064del3                   (BIC: 5181delGTT) accounted for a large fraction (73%) of <em>BRCA1</em>-attributable hereditary breast/ovarian cancer in families originating from Tuscany (Central Italy) area [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR47">47</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR66">66</a></cite>].</p>
<p>The <em>BRCA1</em> c.1380dupA mutation was reported in at least 14 families from Tuscany and originated here about 30 generations ago (∼750 years)                   [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR65">65</a></cite>].</p>
<p>In Sardinia, contribution of <em>BRCA1/2</em> mutations to breast cancer predisposition has been reported for populations from the Northern part of the island [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR67">67</a></cite>], where founder <em>BRCA2</em> c.8537_8538delAG (BIC: 8765delAG) mutation comprises 28% for <em>BRCA1/2</em> positive families [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR68">68</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR69">69</a></cite>]. The ratio of <em>BRCA</em>2 mutations to <em>BRCA1</em> mutations is approximately 2:1, although <em>BRCA1</em> being more prevalent in South-West area [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR68">68</a></cite>]. Conversely, previously regarded as another founder mutation, <em>BRCA2</em> 3950_3952delTAGinsAT was found instead running in families belonging to a single extended pedigree [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR68">68</a></cite>].</p>
<p>The <em>BRCA1</em> c.4964_4982del19 (BIC: 5083del19) is a founder mutation from the southern region of Calabria and accounted for 23% of all                   <em>BRCA1</em> mutations [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR60">60</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR63">63</a></cite>]. It was also recurrently found at least four times in Sicilia [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR70">70</a></cite>, <cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR71">71</a></cite>]. Another <em>BRCA1</em> c.4724delC (BIC: 4843delC) mutation could be a possible Sicilian founder mutation, although present evidence is scarce [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR71">71</a></cite>–<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR73">73</a></cite>].</p>
<p>Using a number of independent approaches, Malacrida et al. [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR74">74</a></cite>] showed that previously reported <em>BRCA1</em> c.5062_5064delGTT (BIC: 5181_5183delGTT/1688Val) variant of unknown significance (VUS) actually is a deleterious mutation                   with high frequency in North-East Italy [<cite><a href="http://www.springerlink.com/content/e823p38j11v66763/fulltext.html#CR74">74</a></cite>]. The founder c.5062_5064delGTT mutation accounts for 15% (9/61) of families with small <em>BRCA1</em> mutations.</p></blockquote>
<p>My full review article: Janavicius R. <a href="http://www.springerlink.com/content/e823p38j11v66763/?p=2489fceed4384a9fbd3ba5950f065df0&amp;pi=8">Founder   <em>BRCA1/2</em> mutations in the Europe: implications for hereditary   breast-ovarian cancer prevention and control</a></p>
<p>TBC</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">254</post-id>
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