<?xml version='1.0' encoding='UTF-8'?><?xml-stylesheet href="http://www.blogger.com/styles/atom.css" type="text/css"?><feed xmlns='http://www.w3.org/2005/Atom' xmlns:openSearch='http://a9.com/-/spec/opensearchrss/1.0/' xmlns:blogger='http://schemas.google.com/blogger/2008' xmlns:georss='http://www.georss.org/georss' xmlns:gd="http://schemas.google.com/g/2005" xmlns:thr='http://purl.org/syndication/thread/1.0'><id>tag:blogger.com,1999:blog-3143427707129641881</id><updated>2025-04-30T17:46:17.213+05:30</updated><category term="bash"/><category term="FORTRAN"/><category term="grace"/><category term="gromacs"/><category term="matlab"/><category term="vmd"/><category term="awk"/><category term="movies"/><category term="ssh"/><category term="sshfs"/><category term="vim"/><category term="ASCII TABLE"/><category term="Mac"/><category term="contour"/><category term="copy"/><category term="dipole vector"/><category term="ffmpeg"/><category term="fusermount"/><category term="inset"/><category term="plotting"/><category term="symbols"/><category term="tachyon"/><category term="ubuntu"/><title type='text'>Simulate, Analyse, Plot ...</title><subtitle type='html'>This blog shares my experience with different software I use.&#xa;&lt;br&gt;Remember &lt;b&gt;google&lt;/b&gt; is your best friend!</subtitle><link rel='http://schemas.google.com/g/2005#feed' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/posts/default'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default?redirect=false'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/'/><link rel='hub' href='http://pubsubhubbub.appspot.com/'/><link rel='next' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default?start-index=26&amp;max-results=25&amp;redirect=false'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><generator version='7.00' uri='http://www.blogger.com'>Blogger</generator><openSearch:totalResults>33</openSearch:totalResults><openSearch:startIndex>1</openSearch:startIndex><openSearch:itemsPerPage>25</openSearch:itemsPerPage><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-4584797606354900007</id><published>2016-03-14T01:28:00.001+05:30</published><updated>2017-11-03T11:29:47.198+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="ffmpeg"/><category scheme="http://www.blogger.com/atom/ns#" term="tachyon"/><category scheme="http://www.blogger.com/atom/ns#" term="vmd"/><title type='text'>VMD High Resolution Image and Movie</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;div style=&quot;line-height: 1.38; margin-bottom: 6pt; margin-top: 18pt; text-align: left;&quot;&gt;
A nice wiki can be found &lt;a href=&quot;https://ourphysics.org/wiki/index.php/How_to_make_images_for_publication_using_VMD&quot;&gt;here&lt;/a&gt;. The followings are my take home notes from various blogs and wikies.&lt;/div&gt;
&lt;div style=&quot;line-height: 1.38; margin-bottom: 6pt; margin-top: 18pt; text-align: left;&quot;&gt;
&lt;br /&gt;&lt;/div&gt;
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&lt;h2 style=&quot;text-align: left;&quot;&gt;
High resolution image&lt;/h2&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;Here are some steps which I usually follow to make &lt;/span&gt;high quality&lt;span style=&quot;font-family: inherit;&quot;&gt; image from VMD.&lt;/span&gt;&lt;/div&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Set the visualization screen (vmdscene) according to requirement&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Render the vmdscene &amp;nbsp;using tachyon mode.&lt;/span&gt;&lt;/div&gt;
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&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;File -&amp;gt; Render -&amp;gt; Tachyon&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Change the default Render command to have something like&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt; text-align: left;&quot;&gt;
&lt;li style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;&quot;/tachyon_path/tachyon_exe&quot; -aasamples 12 %s -format TGA -res 1024 1024 -o %s.tga&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;ul&gt;
&lt;li&gt;&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;(The resolution can be tuned by changing the value for -res option (which is 1024 1024 in this case).&lt;/span&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Enable Ambient occlusion lighting in the Display -&amp;gt; Display Settings window by selecting &quot;on&quot; in &quot;Amb. Occl&quot; and &quot;Shadows&quot; choosers.&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;If AO effect is being used, the choice of &amp;nbsp;material also affect the final visual effects. Use &amp;nbsp;&quot;Diffuse&quot;, &quot;AOshiny&quot;, &quot;AOChalky&quot;, or &quot;AOEdgy&quot; materials.&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;If the image size (dimension) needs to be changed, this can be achieved by resizing the vmd display size. This can be done as &lt;/span&gt;&lt;/div&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;br /&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;From VMD Main:&lt;/span&gt;&lt;/div&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Extension -&amp;gt; Tk Console&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Type display resize x y&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Set the x y values as per requirement. &lt;/span&gt;&lt;/div&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;br /&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Tachyon can also be used in parallel by using the -numthreads flag. To know available options use Tachyon -h commands.&lt;/span&gt;&lt;/div&gt;
&lt;h2 style=&quot;text-align: left;&quot;&gt;
High resolution video&lt;/h2&gt;
&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Additional software: ffmpeg&lt;/span&gt;&lt;/div&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;First create the .dat file for each frame by choosing the following &lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Extension -&amp;gt; Visualization -&amp;gt; Movie Maker&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Change the Movie Maker settings as &lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Renderer -&amp;gt; Tachyon&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Name of the movie frame&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Movie Settings -&amp;gt; Trajectory with ‘4. Delete image files’ uncheked&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Format -&amp;gt; Targa Frames&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Run this to generate the .dat files&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
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&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Now process the *.dat files with the following option as slurm jobs&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;tachyon=/software/vmd-1.9.2-x86_64/lib64/tachyon_LINUXAMD64&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;${tachyon} -numthreads 16 -aasamples 12 frame.${a}.dat -format TGA -res 512 512 -o frame.${a}.tga;&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;(Change all the numbers accordingly)&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;If a huge number of frames are required, then the job can be split as multiple slurm jobs which will speed up the whole process&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Finally process all the image files with ffmpeg&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;ffmpeg -threads 16 -r 30 -i frmae.%05d.tga -s 512x512 -vcodec libx264 -b 5000k movie.mpg&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;(by assuming all the frames has dimension 512x512. If the frame dimension has changed by display resize command, then that value needs to be used here)&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;One can also play with the ffmpeg options&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;br /&gt;
&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;span style=&quot;background-color: transparent; color: black; font-style: normal; font-weight: 700; text-decoration: none; vertical-align: baseline;&quot;&gt;N. B. - Please make sure to have enough hard disk space before running these jobs.&lt;/span&gt;&lt;span style=&quot;background-color: transparent; color: black; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt; &lt;/span&gt;&lt;/span&gt;&lt;/div&gt;
&lt;h2 dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 6pt; margin-top: 18pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-size: small; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;One more method for movie (less time consuming)&lt;/span&gt;&lt;/h2&gt;
&lt;ul style=&quot;margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Renderer -&amp;gt; POV-Ray&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Movie Settings -&amp;gt; Trajectory with ‘4. Delete image files’ uncheked&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.38; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;Format TARGA Frame (ImageMagic)&lt;/span&gt;&lt;/div&gt;
&lt;/li&gt;
&lt;li dir=&quot;ltr&quot; style=&quot;background-color: transparent; color: black; font-style: normal; font-variant-caps: normal; font-variant-ligatures: normal; font-weight: 400; list-style-type: disc; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;span style=&quot;background-color: transparent; color: black; font-family: inherit; font-style: normal; font-weight: 400; text-decoration: none; vertical-align: baseline;&quot;&gt;ffmpeg -threads 4 -r 30 -i final.frame.%05d.tga -s 512x512 -vcodec libx264 -b 5000k movie.mpg&lt;/span&gt;&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.656; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;br /&gt;
&lt;table align=&quot;center&quot; cellpadding=&quot;0&quot; cellspacing=&quot;0&quot; class=&quot;tr-caption-container&quot; style=&quot;margin-left: auto; margin-right: auto; text-align: center;&quot;&gt;&lt;tbody&gt;
&lt;tr&gt;&lt;td style=&quot;text-align: center;&quot;&gt;&lt;a href=&quot;https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEg6Vm8oybE4Oi3c3oTPzn8Tg7W8M-tdH8FRKU5-B4rw2Mhqjqq3h4leF2sif9GY0X6zf_FRFvC3LKECjuzWIl9Evlr5rjcwW7HiCaMdjVltDBJJACCdTVRf1wFlaknL_u9GVw3NJ70idpI/s1600/blog.jpg&quot; style=&quot;margin-left: auto; margin-right: auto;&quot;&gt;&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;img border=&quot;0&quot; height=&quot;250&quot; src=&quot;https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEg6Vm8oybE4Oi3c3oTPzn8Tg7W8M-tdH8FRKU5-B4rw2Mhqjqq3h4leF2sif9GY0X6zf_FRFvC3LKECjuzWIl9Evlr5rjcwW7HiCaMdjVltDBJJACCdTVRf1wFlaknL_u9GVw3NJ70idpI/s400/blog.jpg&quot; width=&quot;400&quot; /&gt;&lt;/span&gt;&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;tr-caption&quot; style=&quot;text-align: center;&quot;&gt;&lt;span style=&quot;font-family: inherit; font-size: small;&quot;&gt;Example of tachyon rendered image using the mentioned options&lt;/span&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;br /&gt;
&lt;table cellpadding=&quot;0&quot; cellspacing=&quot;0&quot; class=&quot;tr-caption-container&quot; style=&quot;margin-left: auto; margin-right: auto; text-align: center;&quot;&gt;&lt;tbody&gt;
&lt;tr&gt;&lt;td style=&quot;text-align: center;&quot;&gt;&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;tr-caption&quot; style=&quot;text-align: center;&quot;&gt;&lt;span style=&quot;font-family: inherit; font-size: small;&quot;&gt;&lt;br /&gt;&lt;/span&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;/div&gt;
&lt;/li&gt;
&lt;/ul&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/4584797606354900007/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2016/03/vmd-high-resolution-image-and-movie.html#comment-form' title='1 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/4584797606354900007'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/4584797606354900007'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2016/03/vmd-high-resolution-image-and-movie.html' title='VMD High Resolution Image and Movie'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEg6Vm8oybE4Oi3c3oTPzn8Tg7W8M-tdH8FRKU5-B4rw2Mhqjqq3h4leF2sif9GY0X6zf_FRFvC3LKECjuzWIl9Evlr5rjcwW7HiCaMdjVltDBJJACCdTVRf1wFlaknL_u9GVw3NJ70idpI/s72-c/blog.jpg" height="72" width="72"/><thr:total>1</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-5404634541322378394</id><published>2016-03-08T00:43:00.004+05:30</published><updated>2016-03-08T00:49:38.698+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="grace"/><title type='text'>Handling multi column data in xmgrace</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;div style=&quot;text-align: justify;&quot;&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;Let say the data file contains 5 columns and we would like to plot the following&lt;/span&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;1. Column 1 vs column 3, the correct syntax is &lt;/span&gt;
&lt;br /&gt;
&lt;code&gt;&amp;nbsp;&amp;nbsp;xmgrace -block file -bxy 1:3&lt;/code&gt;
&lt;br /&gt;
&lt;br /&gt;
2. Column 1 vs. all other columns&amp;nbsp;
&lt;br /&gt;
&lt;code&gt;&amp;nbsp;   xmgrace -nxy file&lt;/code&gt;
&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/5404634541322378394/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2016/03/handling-multi-column-data-in-xmgrace.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/5404634541322378394'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/5404634541322378394'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2016/03/handling-multi-column-data-in-xmgrace.html' title='Handling multi column data in xmgrace'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-8564098022776544497</id><published>2015-11-05T03:01:00.000+05:30</published><updated>2015-11-05T03:05:16.303+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="FORTRAN"/><title type='text'>Coloured terminal output from Fortran</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
I was just curious to print some of the error messages from fortran code in different color. So I ended up with this suggestion after doing little bit google search - &lt;br /&gt;
&lt;br /&gt;
&lt;code&gt;print *, &#39;Test color print -&amp;gt; &#39;//achar(27)//&#39;[31m Red&#39;//achar(27)//&#39;[0m.&#39;&lt;/code&gt;&lt;br /&gt;
&lt;br /&gt;
Color codes are:&lt;br /&gt;
&lt;br /&gt;
&lt;pre&gt;&lt;code&gt;[90m=dark grey           [30m=black
[91m=peach               [31m=red
[92m=light green         [32m=green
[93m=light yellow        [33m=yellow
[94m=light blue          [34m=blue
[95m=pink                [35m=purple
[96m=light aqua          [36m=aqua
[97m=pearl white
&lt;/code&gt;&lt;/pre&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/8564098022776544497/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/11/coloured-terminal-output-from-fortran.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8564098022776544497'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8564098022776544497'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/11/coloured-terminal-output-from-fortran.html' title='Coloured terminal output from Fortran'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-3737992188591327621</id><published>2015-06-25T22:26:00.002+05:30</published><updated>2015-06-25T22:27:17.202+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="bash"/><title type='text'>Zero padded integer in BASH</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;

Let say we are trying to print
&lt;br/&gt;
&lt;code&gt;
01
&lt;/code&gt;
&lt;br/&gt;&lt;br/&gt;
We can do that, using the following command
&lt;br/&gt;
&lt;code&gt;
i=1
&lt;br/&gt;
a=`printf &quot;%0*d\n&quot; 2 $i`
&lt;br/&gt;
&lt;/code&gt;
&lt;br/&gt;
If we echo the ${a} variable, we will see the desired formatted integer i.e.
&lt;code&gt;
&lt;br/&gt;
01
&lt;/code&gt;
&lt;br /&gt;&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/3737992188591327621/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/zero-padded-integer-in-bash.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/3737992188591327621'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/3737992188591327621'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/zero-padded-integer-in-bash.html' title='Zero padded integer in BASH'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-845639729225673112</id><published>2015-06-18T23:39:00.000+05:30</published><updated>2017-11-03T11:31:37.040+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="gromacs"/><title type='text'>MDP files in GROMACS</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
Molecular dynamics parameters file&lt;br /&gt;&lt;br /&gt;For energy minimization: &lt;a href=&quot;http://linuxrajib.blogspot.com/p/emmdp.html&quot;&gt;em.mdp&lt;/a&gt;&lt;br /&gt;For NVT simulations: &lt;a href=&quot;http://linuxrajib.blogspot.com/p/nvt.html&quot;&gt;nvt.mdp&lt;/a&gt;&lt;br /&gt;For NPT simulations: &lt;a href=&quot;http://linuxrajib.blogspot.com/p/npt.html&quot;&gt;npt.mdp&lt;/a&gt;&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/845639729225673112/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/mdp-files-in-gromacs.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/845639729225673112'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/845639729225673112'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/mdp-files-in-gromacs.html' title='MDP files in GROMACS'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-8101923279240089135</id><published>2015-06-18T23:38:00.000+05:30</published><updated>2017-11-03T11:38:06.896+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="gromacs"/><title type='text'>Create Binary Mixture in GROMACS</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;h2 style=&quot;text-align: left;&quot;&gt;
BINARY MIXTURE&lt;/h2&gt;
Let say someone is interested to study some protein molecules in Water-Ethanol binary mixture. Now the question is how to create binary solvent like this?&lt;br /&gt;&lt;br /&gt;In Gromacs genbox is very powerful in this context. If ratio does not matter, then one can use the following command&lt;br /&gt;&lt;br /&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;genbox_d -cp ethanol.gro -cs spc216.gro -p topol.top -o water_ethanol.gro -box a b c&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;The above commands will fill the simulation box with ethanol and water molecules with random numbers of water molecules and number of ethanol molecules presents in the ethanol.gro file. However, if one is intend to create some exact number percentage of ethanol-water mixture, the following method will be very useful&lt;br /&gt;&lt;br /&gt;&lt;h3 style=&quot;text-align: left;&quot;&gt;
 Water-Ethanol binary mixture of defined %&lt;/h3&gt;
Create a .pdb file of single ethanol molecule. (It is very easy, just google it out or create .pdb from software like pymol, prodrg etc., if .gro file is there, no need to create the .pdb file). &lt;br /&gt;Convert that .pdb file to .gro file by executing any one of the following commands &lt;br /&gt;&lt;br /&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;editconf -f ethanol.pdb -o ethanol.gro&lt;/span&gt;&amp;nbsp;&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
you can in principle also use &lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;pdb2gmx&lt;/span&gt; command, however it will ask for a forcefield and solvent type, by choosing appropriate forcecfield and solvent as none you will end up with the required .gro file. &lt;br /&gt;You can similarly generate a single water .gro file or just copy and paste from existing spc216.gro file. The single water .gro file will be similar to this single water gro&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;3 &lt;br /&gt;1SOL OW 1 .230 .628 .113 &lt;br /&gt;1SOL HW1 2 .137 .626 .150 &lt;br /&gt;1SOL HW2 3 .231 .589 .021&lt;/span&gt;&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
Now, you are ready to go. Let say you want to prepare 10% Water-Ethanol mixture and the numbers are 90Water + 10Ethanol molecules. You can use the following method &lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
Create 10Ethanol.gro file:&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt; genbox -ci ethanol.gro -nmol 10 -o ethanol10.gro -box a b c&lt;/span&gt; &lt;br /&gt; &lt;br /&gt;Add 90 water molecules to it.&lt;br /&gt;&lt;br /&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;genbox -cp ethanol10.gro -ci water.gro -nmol 90 -o ethanol10_water90.gro&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;Now your binary solvent is ready for use. Enjoy the simulation!&lt;br /&gt;&lt;br /&gt;N.B.: There exist some other alternate way also e.g. instead of specifying 90 water molecules and using -ci option for genbox, one can indeed use -cs spc216.gro option also. In this case one needs to delete the extra water molecules in the resultant .gro file manually :).&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/8101923279240089135/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/create-binary-mixture-in-gromacs.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8101923279240089135'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8101923279240089135'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/create-binary-mixture-in-gromacs.html' title='Create Binary Mixture in GROMACS'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-3392608285839574195</id><published>2015-06-18T23:34:00.001+05:30</published><updated>2017-11-03T11:39:29.195+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="ubuntu"/><title type='text'>Add missing GPG keys</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
GPG errors: &lt;br /&gt;&lt;br /&gt;&lt;div&gt;
W: GPG error: http://ppa.launchpad.net jaunty Release: The following signatures couldn&#39;t be verified because the public key is not available: NO_PUBKEY 6D975C4791E7EE5E &lt;br /&gt;W: A error occurred during the signature verification. The repository is not updated and the previous index files will be used.GPG error: http://ppa.launchpad.net jaunty Release: The following signatures couldn&#39;t be verified because the public key is not available: NO_PUBKEY 5A9BF3BB4E5E17B5 &lt;br /&gt;W: GPG error: http://ppa.launchpad.net jaunty Release: The following signatures couldn&#39;t be verified because the public key is not available: NO_PUBKEY 7FB8BEE0A1F196A8 &lt;br /&gt;&lt;br /&gt;The fix for this is to re-download the keys using the hexidecimal numbers given in the error. Open a terminal and run the following command &lt;br /&gt;&lt;br /&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys hexadeciaml-number-shows=in-error &lt;/span&gt;&lt;br /&gt;&lt;br /&gt;The output should look like this:&lt;br /&gt;&quot;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;gpg: requesting key hexadecimal-output from hkp server keyserver.ubuntu.com&lt;/span&gt;&quot;&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/3392608285839574195/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/add-missing-gpg-keys.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/3392608285839574195'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/3392608285839574195'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/add-missing-gpg-keys.html' title='Add missing GPG keys'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-1651397212516714364</id><published>2015-06-18T03:48:00.003+05:30</published><updated>2017-11-03T11:43:39.249+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="bash"/><title type='text'>Get the nth positional argument in bash?</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
Positional argument can be obtained in bash by creating the following file&lt;br /&gt;
&lt;br /&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot;, courier, monospace;&quot;&gt;#!/bin/bash&lt;/span&gt;&lt;br /&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;n=2
echo ${!n}&lt;/span&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;div&gt;
Running that file in the following way:&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;&lt;br /&gt;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;./file.sh sun mon tue wed&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
will print mon&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
The next one also gives the same result&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;eval echo \${$n} &lt;/span&gt;&lt;/div&gt;
&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/1651397212516714364/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/get-nth-positional-argument-in-bash.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/1651397212516714364'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/1651397212516714364'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/06/get-nth-positional-argument-in-bash.html' title='Get the nth positional argument in bash?'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-1544543749921197105</id><published>2015-04-22T03:11:00.004+05:30</published><updated>2015-04-22T03:13:54.023+05:30</updated><title type='text'>Recurssive incement of variable in bash</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;span class=&quot;pln&quot;&gt;var&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;=&lt;/span&gt;&lt;span class=&quot;pln&quot;&gt;$&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;((&lt;/span&gt;&lt;span class=&quot;pln&quot;&gt;var&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;+&lt;/span&gt;&lt;span class=&quot;lit&quot;&gt;1&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;))&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;

or
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;span class=&quot;pun&quot;&gt;((&lt;/span&gt;&lt;span class=&quot;pln&quot;&gt;var&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;=&lt;/span&gt;&lt;span class=&quot;pln&quot;&gt;var&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;+&lt;/span&gt;&lt;span class=&quot;lit&quot;&gt;1&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;))&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;

or
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;span class=&quot;pun&quot;&gt;((&lt;/span&gt;&lt;span class=&quot;pln&quot;&gt;var&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;+=&lt;/span&gt;&lt;span class=&quot;lit&quot;&gt;1&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;))&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;

or
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;span class=&quot;pun&quot;&gt;((&lt;/span&gt;&lt;span class=&quot;pln&quot;&gt;var&lt;/span&gt;&lt;span class=&quot;pun&quot;&gt;++))&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;

or
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;span class=&quot;pln&quot;&gt;let &lt;/span&gt;&lt;span class=&quot;str&quot;&gt;&quot;var=var+1&quot;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;

or
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;span class=&quot;pln&quot;&gt;let &lt;/span&gt;&lt;span class=&quot;str&quot;&gt;&quot;var+=1&quot;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;

or
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;pre class=&quot;lang-bsh prettyprint prettyprinted&quot;&gt;&lt;code&gt;&lt;span class=&quot;pln&quot;&gt;let &lt;/span&gt;&lt;span class=&quot;str&quot;&gt;&quot;var++&quot;&lt;/span&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/1544543749921197105/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/04/recurssive-incement-of-variable-in-bash.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/1544543749921197105'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/1544543749921197105'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/04/recurssive-incement-of-variable-in-bash.html' title='Recurssive incement of variable in bash'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-6807260663870659486</id><published>2015-01-03T00:52:00.003+05:30</published><updated>2017-11-03T11:44:25.988+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="bash"/><category scheme="http://www.blogger.com/atom/ns#" term="sshfs"/><title type='text'>Log out open remote SSH session</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
Kill forgotten ssh login&lt;br /&gt;&lt;br /&gt;&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;pkill -9 -t pts/0&lt;/span&gt;&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/6807260663870659486/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2015/01/log-out-open-remote-ssh-session.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/6807260663870659486'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/6807260663870659486'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2015/01/log-out-open-remote-ssh-session.html' title='Log out open remote SSH session'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-4373473798139106955</id><published>2014-09-24T02:45:00.002+05:30</published><updated>2017-11-03T11:50:32.956+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="FORTRAN"/><title type='text'>Usefull tips for FORTRAN</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
Few tips for FORTRAN:&lt;br /&gt;
&lt;br /&gt;
&lt;div&gt;
&lt;b&gt;Get arguments from command line&lt;/b&gt; &lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;character (len = 20) :: arg1 &lt;br /&gt;call getarg (1, arg1)
&lt;br /&gt;
if (len_trim(arg1) == 0) then&amp;nbsp;
&lt;br /&gt;
&amp;nbsp; &amp;nbsp;print*,&#39;No Arg1 provided&#39;
 stop&lt;br /&gt;endif &lt;br /&gt;read (arg1, *) nsteps &lt;/span&gt;&lt;br /&gt;
&lt;br /&gt;
In this example FORTRAN takes the first arguments and read as number of steps. Always use the warning if loop for multiple argument, sometimes one might miss to give inputs of one argument and it becomes difficult to debug the code.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt; Use bash shell command in FORTRAN &lt;/b&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt; character (len = 1024) :: command&lt;br /&gt;command = &#39;cp file1 folder1/&#39;&lt;br /&gt;call system ( trim(command))&lt;/span&gt;&lt;br /&gt;
In this example file1 is copied to folder1/&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt; Print integer padded by zeros &lt;/b&gt;&lt;br /&gt;
Let say we would like to print 4 digit integer as &lt;br /&gt;
&lt;br /&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;0001 &lt;br /&gt;0002 &lt;br /&gt;.... &lt;br /&gt;9999 &lt;/span&gt;&lt;br /&gt;
&lt;br /&gt;
only thing we have use a formatting string &lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;I4.4 &lt;/span&gt;and we are done. &lt;/div&gt;
&lt;div&gt;
&lt;b&gt;Get number of lines in a data file&lt;/b&gt;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;open(unit,file=&#39;filename&#39;) &lt;br /&gt;nline = 0 &lt;br /&gt;do &lt;br /&gt;&amp;nbsp; &amp;nbsp; read (unit, *, end = 10) &lt;br /&gt;&amp;nbsp; &amp;nbsp; nlines = nlines + 1 &lt;br /&gt;end do &lt;br /&gt;10 close(unit)&lt;/span&gt;&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/4373473798139106955/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2014/09/usefull-tips-for-fortran.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/4373473798139106955'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/4373473798139106955'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2014/09/usefull-tips-for-fortran.html' title='Usefull tips for FORTRAN'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-8449786731025047022</id><published>2014-08-29T23:53:00.002+05:30</published><updated>2017-11-03T11:51:03.092+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="vmd"/><title type='text'>VMD TIPS</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;LOAD MULTIPLE TRAJECTORIES IN VMD&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;set filelist [glob *.pdb]&lt;br /&gt;foreach file $filelist {mol new $file waitfor all}&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;&lt;div style=&quot;text-align: left;&quot;&gt;
&amp;nbsp; &lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/8449786731025047022/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2014/08/vmd-tips.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8449786731025047022'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8449786731025047022'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2014/08/vmd-tips.html' title='VMD TIPS'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-7826303362724788271</id><published>2014-07-17T03:38:00.000+05:30</published><updated>2017-11-03T11:53:40.118+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="Mac"/><category scheme="http://www.blogger.com/atom/ns#" term="vim"/><title type='text'>Mac - OS and VIM Tips</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
Mac - OS and VIM Tips&lt;br /&gt;&lt;br /&gt;To get the desired feature edit ~/.vimrc file&lt;br /&gt;&lt;br /&gt;Enable text color &lt;br /&gt;&lt;br /&gt;&lt;div&gt;
 &lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;filetype plugin indent on&amp;nbsp;&lt;/span&gt;&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;syntax on&lt;/span&gt;&lt;br /&gt;&lt;br /&gt;Jump to beginning/end of a line using Shift Home/End&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:map &amp;lt;ESC&amp;gt;[H &amp;lt;Home&amp;gt;&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:map &amp;lt;ESC&amp;gt;[F &amp;lt;End&amp;gt;&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:imap &amp;lt;ESC&amp;gt;[H &amp;lt;C-O&amp;gt;&amp;lt;Home&amp;gt;&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:imap &amp;lt;ESC&amp;gt;[F &amp;lt;C-O&amp;gt;&amp;lt;End&amp;gt;&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:cmap &amp;lt;ESC&amp;gt;[H &amp;lt;Home&amp;gt;&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:cmap &amp;lt;ESC&amp;gt;[F &amp;lt;End&amp;gt;
&lt;/span&gt; &lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
Jump from one word to another using the option + forward arrow and backword arrow combinations&amp;nbsp;&lt;/div&gt;
&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:map &amp;lt;ESC&amp;gt;f el&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:imap &amp;lt;ESC&amp;gt;b &amp;lt;C-o&amp;gt;b&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:imap &amp;lt;ESC&amp;gt;f &amp;lt;C-o&amp;gt;el&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;:cmap &amp;lt;ESC&amp;gt;f el&lt;/span&gt;&lt;br /&gt;


&lt;/div&gt;
&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/7826303362724788271/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2014/07/mac-os-and-vim-tips.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7826303362724788271'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7826303362724788271'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2014/07/mac-os-and-vim-tips.html' title='Mac - OS and VIM Tips'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-7668346107573959270</id><published>2014-05-30T02:36:00.000+05:30</published><updated>2017-11-03T11:57:08.875+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="FORTRAN"/><title type='text'>Fortran code for sorting a data array</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;br /&gt;This program can be used to sort a set of data array either in ascending or descending order.&lt;br /&gt;&lt;br /&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;program sort_data&lt;br /&gt;implicit none&lt;br /&gt;integer, parameter :: array_length = 100&lt;br /&gt;integer :: i, count &lt;br /&gt;double precision, dimension(1:array_length) :: data &lt;br /&gt;double precision :: temp&lt;br /&gt;logical :: not_sorted &lt;br /&gt;&lt;/span&gt;&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;open(unit=1, file=&#39;data.input&#39;, action=&#39;read&#39;, status=&#39;old&#39;)&lt;br /&gt;&lt;/span&gt;&lt;/div&gt;
&lt;div&gt;
&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;read(1,*) (data(i), i=1, array_length) &lt;br /&gt;not_sorted = .TRUE.&lt;br /&gt;do while (not_sorted)&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp;count = 0&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp;do i = 1, state - 1&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; temp = data(i)&lt;br /&gt;! if one needs to get ascending order need to change here .LT. to .GT. &lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp;if (data(i) .LT. data(i + 1)) then&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; data(i) = data(i+1)&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; data(i+1) = temp&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; count = count&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp;else&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; count = count + 1&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp; &amp;nbsp;end if&lt;br /&gt;&amp;nbsp; &amp;nbsp; &amp;nbsp;end do&lt;br /&gt;&amp;nbsp; &amp;nbsp; if (count == (state - 1)) not_sorted = .FALSE.&lt;br /&gt;end do&lt;br /&gt;end program sort_data&lt;/span&gt;&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/7668346107573959270/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2014/05/fortran-code-for-sorting-data-array.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7668346107573959270'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7668346107573959270'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2014/05/fortran-code-for-sorting-data-array.html' title='Fortran code for sorting a data array'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-7503173996227726678</id><published>2014-05-24T02:25:00.001+05:30</published><updated>2015-06-18T23:43:01.364+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="awk"/><category scheme="http://www.blogger.com/atom/ns#" term="bash"/><title type='text'>Bash Shell Scripting for file handling</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;h2 style=&quot;text-align: left;&quot;&gt;
Add two single column file side by side&lt;/h2&gt;
&lt;ol style=&quot;text-align: left;&quot;&gt;
&lt;/ol&gt;
&lt;ul style=&quot;text-align: left;&quot;&gt;
&lt;li&gt;Of same length&lt;/li&gt;
&lt;/ul&gt;
&amp;nbsp; &lt;br /&gt;
&lt;pre class=&quot;alt2&quot; style=&quot;border: 1px inset; margin: 0px; overflow: auto; padding: 6px;&quot;&gt;awk &#39;NR==FNR{_[NR]=$0;next}{print $1,$2,_[FNR]}&#39; file2 file1 &lt;/pre&gt;
&lt;br /&gt;
&lt;ul style=&quot;text-align: left;&quot;&gt;
&lt;li&gt;Of different length&lt;/li&gt;
&lt;/ul&gt;
&lt;pre class=&quot;alt2&quot; style=&quot;border: 1px inset; margin: 0px; overflow: auto; padding: 6px;&quot;&gt;awk &#39;NR==FNR { a[c=FNR]=$0; next }{ printf &quot;%-8s&lt;span style=&quot;color: blue;&quot;&gt;\t&lt;/span&gt;%s\n&quot;, a[FNR], $0 }
END { for(i=FNR+1;i&amp;lt;=c;i++) print a[i] }&#39; file2 file1&lt;/pre&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;h2 style=&quot;text-align: left;&quot;&gt;
Cut n-th column of a file to separate file &lt;/h2&gt;
&amp;nbsp; &lt;br /&gt;
&lt;pre class=&quot;alt2&quot; style=&quot;border: 1px inset; margin: 0px; overflow: auto; padding: 6px;&quot;&gt;awk &amp;lt; infile &#39;{print $n}&#39; &amp;gt; outfile&lt;/pre&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/7503173996227726678/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2014/05/bash-shell-scripting-for-file-handling.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7503173996227726678'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7503173996227726678'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2014/05/bash-shell-scripting-for-file-handling.html' title='Bash Shell Scripting for file handling'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-3891823232108310446</id><published>2014-05-24T01:26:00.002+05:30</published><updated>2015-06-18T23:44:25.289+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="vim"/><title type='text'>VIM-Search-TIPS</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;h3 style=&quot;text-align: left;&quot;&gt;
Search and replace globally&lt;/h3&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;span style=&quot;font-family: &amp;quot;Courier New&amp;quot;, Courier, monospace;&quot;&gt;:%s/search-string/replace-string/g&lt;/span&gt;&lt;/div&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;h3 style=&quot;text-align: left;&quot;&gt;
Search and replace within a range of particular row and column&lt;/h3&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;/div&gt;
&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.15; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;span style=&quot;background-color: transparent; color: black; font-family: &#39;Courier New&#39;; font-size: 15px; font-style: normal; font-variant: normal; font-weight: normal; text-decoration: none; vertical-align: baseline;&quot;&gt;:1,4 /\%1cYYY/ZZZ/g&lt;/span&gt;&lt;/div&gt;
&lt;div dir=&quot;ltr&quot; style=&quot;line-height: 1.15; margin-bottom: 0pt; margin-top: 0pt;&quot;&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;span id=&quot;docs-internal-guid-64cca3d7-2a8e-4ced-0c39-f8aaee895756&quot; style=&quot;background-color: transparent; color: black; font-family: &#39;Courier New&#39;; font-size: 15px; font-style: normal; font-variant: normal; font-weight: normal; text-decoration: none; vertical-align: baseline;&quot;&gt;&lt;img height=&quot;163&quot; src=&quot;https://docs.google.com/drawings/d/sX-mo5S4F8Y5lSKGXFnq_pw/image?w=542&amp;amp;h=224&amp;amp;rev=150&amp;amp;ac=1&quot; style=&quot;border: medium none; transform: rotate(0rad);&quot; width=&quot;400&quot; /&gt;&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;br/&gt;
&lt;h3 style=&quot;text-align: left;&quot;&gt;
Search using case sensitive string&lt;/h3&gt;
&lt;span style=&quot;font-family: &amp;quot;Courier New&amp;quot;,Courier,monospace;&quot;&gt;/abCdEf\C&lt;/span&gt;  &amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; &lt;span style=&quot;font-family: Arial,Helvetica,sans-serif;&quot;&gt;&quot;Case sensitive&lt;/span&gt;
&lt;br/&gt;
&lt;span style=&quot;font-family: &amp;quot;Courier New&amp;quot;,Courier,monospace;&quot;&gt;/abCdEf\c&lt;/span&gt;  &amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp; &lt;span style=&quot;font-family: Arial,Helvetica,sans-serif;&quot;&gt;&quot;Case insensitive&lt;/span&gt;
&lt;pre&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;pre&gt;&lt;code&gt;&lt;/code&gt;&lt;/pre&gt;
&lt;h3 style=&quot;text-align: left;&quot;&gt;
Search and replace interactively&lt;/h3&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;span style=&quot;font-family: &amp;quot;Courier New&amp;quot;,Courier,monospace;&quot;&gt;:%s/search-string/replace-string/gc&lt;/span&gt;&lt;/div&gt;
&lt;br/&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/3891823232108310446/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2014/05/vim-search-tips.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/3891823232108310446'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/3891823232108310446'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2014/05/vim-search-tips.html' title='VIM-Search-TIPS'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-2081917221223082368</id><published>2013-10-22T23:19:00.002+05:30</published><updated>2017-11-03T12:00:09.719+05:30</updated><title type='text'>Printf and awk</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;AWK&lt;/span&gt;&lt;br /&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;cat input | awk &#39;{printf &quot;%9.6f %9.6f %9.6f\n&quot;, $1, $2, $3}&#39; &amp;gt; output&lt;/span&gt;&lt;br /&gt;
&lt;br /&gt;&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/2081917221223082368/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/10/printf-and-awk.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/2081917221223082368'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/2081917221223082368'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/10/printf-and-awk.html' title='Printf and awk'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-8295198936442583316</id><published>2013-06-14T01:22:00.003+05:30</published><updated>2017-11-03T12:00:43.396+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="FORTRAN"/><title type='text'>Handle large statically allocated data in fortran (&gt; 2GB)</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;Typical error occurs in this case&lt;/span&gt;&lt;br /&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;code&gt;&lt;/code&gt;&lt;br /&gt;&lt;/span&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;fortranfile.f:someline numbe: relocation truncated to fit: R_X86_64_PC32 against `.bss&#39;&lt;/span&gt;&lt;br /&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;fortranfile.f:someline numbe: additional relocation overflows omitted from the output&lt;/span&gt;&lt;/div&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;Solution:&lt;/span&gt;&lt;br /&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;Compile the fortran file with the following option&lt;/span&gt;&lt;br /&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;code&gt;-mcmodel medium -shared-intel&lt;/code&gt; &lt;/span&gt;&lt;br /&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;&lt;br /&gt;&lt;/span&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;Source Link: &lt;a href=&quot;http://software.intel.com/en-us/forums/topic/268374&quot; target=&quot;_blank&quot;&gt;Intel Forum&lt;/a&gt;&lt;/span&gt;&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/8295198936442583316/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/06/handle-large-statically-allocated-data.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8295198936442583316'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8295198936442583316'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/06/handle-large-statically-allocated-data.html' title='Handle large statically allocated data in fortran (&gt; 2GB)'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-4001002496390793026</id><published>2013-04-29T09:57:00.000+05:30</published><updated>2013-04-29T10:18:44.262+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="grace"/><title type='text'>Grace Type Settings</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;style type=&quot;text/css&quot;&gt;TD P { margin-bottom: 0cm; }P { margin-bottom: 0.21cm; }&lt;/style&gt;


&lt;br /&gt;
&lt;table cellpadding=&quot;2&quot; cellspacing=&quot;1&quot; style=&quot;width: 551px;&quot;&gt;
 &lt;colgroup&gt;&lt;col width=&quot;108&quot;&gt;&lt;/col&gt;
 &lt;col width=&quot;430&quot;&gt;&lt;/col&gt;
 &lt;/colgroup&gt;&lt;tbody&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: 1px double #808080; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0.05cm;&quot; width=&quot;108&quot;&gt;Control code&lt;/td&gt;
  &lt;td style=&quot;border: 1px double #808080; padding: 0.05cm;&quot; width=&quot;430&quot;&gt;Description&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\f{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;switch to font named &quot;x&quot;&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\f{n}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;switch to font number n&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\f{}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;return to original font&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\R{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;switch to color named &quot;x&quot;&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\R{n}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;switch to color number n&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\R{}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;return to original color&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\#{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;treat &quot;x&quot; (must be of even length) as list of
   hexadecimal char codes&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\t{xx xy yx yy}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;apply transformation matrix&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\t{}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;reset transformation matrix&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\z{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;zoom x times&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\z{}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;return to original zoom&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\r{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;rotate by x degrees&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\l{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;slant by factor x&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\v{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;shift vertically by x&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\v{}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;return to unshifted baseline&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\V{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;shift baseline by x&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\V{}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;reset baseline&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\h{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;horizontal shift by x&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\n&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;new line&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\u&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;begin underline&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\U&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;stop underline&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\o&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;begin overline&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\O&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;stop overline&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\Fk&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;enable kerning&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\FK&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;disable kerning&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\Fl&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;enable ligatures&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\FL&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;disable ligatures&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\m{n}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;mark current position as n&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\M{n}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;return to saved position n&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\dl&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;LtoR substring direction&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\dr&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;RtoL substring direction&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\dL&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;LtoR text advancing&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\dR&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;RtoL text advancing&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\x&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;switch to Symbol font (same as \f{Symbol})&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\+&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;increase size (same as \z{1.19} ; 1.19 = sqrt(sqrt(2)))&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\-&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;decrease size (same as \z{0.84} ; 0.84 = 1/sqrt(sqrt(2)))&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\s&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;begin subscripting (same as \v{-0.4}\z{0.71})&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\S&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;begin superscripting (same as \v{0.6}\z{0.71})&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\T{xx xy yx yy}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;same as \t{}\t{xx xy yx yy}&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\Z{x}&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;absolute zoom x times (same as \z{}\z{x})&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\q&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;make font oblique (same as \l{0.25})&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\Q&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;undo oblique (same as \l{-0.25})&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\N&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;return to normal style (same as \v{}\t{})&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\\&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;print \&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\n&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;switch to font number n (0-9) (deprecated)&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\c&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;begin using upper 128 characters of set (deprecated)&lt;/td&gt;
 &lt;/tr&gt;
&lt;tr&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: none; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0cm; padding-top: 0cm;&quot; width=&quot;108&quot;&gt;\C&lt;/td&gt;
  &lt;td style=&quot;border-bottom: 1px double #808080; border-left: 1px double #808080; border-right: 1px double #808080; border-top: none; padding-bottom: 0.05cm; padding-left: 0.05cm; padding-right: 0.05cm; padding-top: 0cm;&quot; width=&quot;430&quot;&gt;stop using upper 128 characters of set (deprecated)&lt;/td&gt;
 &lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;br /&gt;
&lt;b&gt;Disclaimer&lt;/b&gt;: I got this on the internet. I do not remember the exact site. All credit goes to the original uploader.
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/4001002496390793026/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/grace-type-settings.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/4001002496390793026'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/4001002496390793026'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/grace-type-settings.html' title='Grace Type Settings'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-8987399093259937950</id><published>2013-04-20T03:55:00.000+05:30</published><updated>2017-11-03T11:23:54.231+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="dipole vector"/><category scheme="http://www.blogger.com/atom/ns#" term="vmd"/><title type='text'>Draw dipole vector of a tagged molecule in VMD</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
It is often needed to visualize the dipole orientation of a tagged molecule. The following steps will guide to achieve this&lt;br /&gt;
&lt;ol style=&quot;text-align: left;&quot;&gt;
&lt;li&gt;Select the molecule by its resid&amp;nbsp;&lt;/li&gt;
&lt;li&gt;Open Tk console from drop down menu of Extensions → Tk Console&amp;nbsp;&lt;/li&gt;
&lt;li&gt;Select every atom of the molecule by separate nicknames, by using the following command. Let say we would like to see the dipole moment vector of water molecules, in that case, the following codes need to be used&amp;nbsp;&lt;/li&gt;
&lt;br /&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;set ow [atomselect top &quot;type OW&quot;]&amp;nbsp;&lt;/span&gt;&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;set hw1 [atomselect top &quot;type HW1&quot;]&lt;br /&gt;set hw2 [atomselect top &quot;type HW2&quot;]&amp;nbsp;&lt;/span&gt;&lt;/div&gt;
&lt;br /&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;li&gt;Then set charge of every atom by using the following commands&amp;nbsp;&lt;/li&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;span style=&quot;font-family: &amp;quot;courier new&amp;quot; , &amp;quot;courier&amp;quot; , monospace;&quot;&gt;$ow set charge -1.00&lt;br /&gt;$hw1 set charge -0.5&lt;br /&gt;$hw2 set charge -0.5&lt;/span&gt;
&lt;br /&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;br /&gt;
&lt;li&gt;Finally open the Etensions → Visualizations → Dipole Moment Watcher The following window will pop up&lt;/li&gt;
&lt;br /&gt;
&lt;/div&gt;
&lt;a href=&quot;https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjcMW47q9D2EL0spxS_fUeRW4Glctd3GW90U_ehkkcAFfJHGTYyo5D8eHHLZHUhsUos4z2qK92h5HxxWTpknJbllhIlzAXUpCmYxDIvKgdyFXf7XzChIpQob_bUTH-Ps2xHsYMTrcU2Bm4/s1600/vmd_dmw.png&quot; imageanchor=&quot;1&quot; style=&quot;clear: left; display: inline !important; margin-bottom: 1em; margin-left: 1em; text-align: center;&quot;&gt;&lt;img border=&quot;0&quot; class=&quot;separator&quot; div=&quot;&quot; src=&quot;https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjcMW47q9D2EL0spxS_fUeRW4Glctd3GW90U_ehkkcAFfJHGTYyo5D8eHHLZHUhsUos4z2qK92h5HxxWTpknJbllhIlzAXUpCmYxDIvKgdyFXf7XzChIpQob_bUTH-Ps2xHsYMTrcU2Bm4/s1600/vmd_dmw.png&quot; style=&quot;clear: both; t-align: left;&quot; /&gt;&lt;/a&gt;&lt;br /&gt;&lt;div&gt;
&lt;br /&gt;&lt;/div&gt;
&lt;li&gt;Then select the molecules by its resid and change the color of the dipoles according to your need. One can select maximum of six dipoles to show at a time.&lt;/li&gt;
&lt;br /&gt;
&lt;li&gt;The final snap will look like this&amp;nbsp;&lt;/li&gt;
&lt;/ol&gt;
&lt;table align=&quot;center&quot; cellpadding=&quot;0&quot; cellspacing=&quot;0&quot; class=&quot;tr-caption-container&quot; style=&quot;margin-left: auto; margin-right: auto; text-align: center;&quot;&gt;&lt;tbody&gt;
&lt;tr&gt;&lt;td style=&quot;text-align: center;&quot;&gt;&lt;a href=&quot;https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjbc73nbkQUQgRTQtsKd6wW5RHjR5HbgoasgtTtfIuaOX9MQq_e2VSZBtZlWHAr0NW_nNyW8mDhu3M_iaXJk0aizpi3BFYuQYN6iTAxGf0f22u76zk8kxuTFoes-DIkVFfXmyNNvRxQmYE/s1600/water.png&quot; style=&quot;margin-left: auto; margin-right: auto;&quot;&gt;&lt;img border=&quot;0&quot; src=&quot;https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjbc73nbkQUQgRTQtsKd6wW5RHjR5HbgoasgtTtfIuaOX9MQq_e2VSZBtZlWHAr0NW_nNyW8mDhu3M_iaXJk0aizpi3BFYuQYN6iTAxGf0f22u76zk8kxuTFoes-DIkVFfXmyNNvRxQmYE/s1600/water.png&quot; /&gt;&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;tr-caption&quot; style=&quot;text-align: center;&quot;&gt;Dipole moment representation of SPC/E water model&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;br /&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/8987399093259937950/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/draw-dipole-vector-of-tagged-molecule.html#comment-form' title='2 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8987399093259937950'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8987399093259937950'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/draw-dipole-vector-of-tagged-molecule.html' title='Draw dipole vector of a tagged molecule in VMD'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><media:thumbnail xmlns:media="http://search.yahoo.com/mrss/" url="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjcMW47q9D2EL0spxS_fUeRW4Glctd3GW90U_ehkkcAFfJHGTYyo5D8eHHLZHUhsUos4z2qK92h5HxxWTpknJbllhIlzAXUpCmYxDIvKgdyFXf7XzChIpQob_bUTH-Ps2xHsYMTrcU2Bm4/s72-c/vmd_dmw.png" height="72" width="72"/><thr:total>2</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-8832885533811440303</id><published>2013-04-20T02:33:00.000+05:30</published><updated>2017-11-03T11:58:46.645+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="bash"/><category scheme="http://www.blogger.com/atom/ns#" term="copy"/><title type='text'>Copy single file in multiple folder using bash shell</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
Recursive copy&lt;div&gt;
&lt;br /&gt;&lt;code&gt; echo folder1 folder2 folder3 | xargs -n 1 cp -f file &lt;/code&gt;&lt;br /&gt;
&lt;br /&gt;
or&lt;br /&gt;
&lt;br /&gt;
&lt;code&gt; echo folder*/ | xargs -n 1 cp -f file &lt;/code&gt;&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/8832885533811440303/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/copy-single-file-in-multiple-folder.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8832885533811440303'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8832885533811440303'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/copy-single-file-in-multiple-folder.html' title='Copy single file in multiple folder using bash shell'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-8574919586009165333</id><published>2013-04-04T17:58:00.000+05:30</published><updated>2017-11-03T12:02:35.601+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="fusermount"/><category scheme="http://www.blogger.com/atom/ns#" term="ssh"/><category scheme="http://www.blogger.com/atom/ns#" term="sshfs"/><title type='text'>Mounting a remote directory to local PC using ssh</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;If one needs to mount any directory of HPC (or any other remote PCs) to his/her local desktop then the following steps to be followed&lt;/span&gt;&lt;br /&gt;
&lt;ul&gt;
&lt;li&gt;&lt;span style=&quot;font-family: inherit;&quot;&gt;Check for passwordless ssh login (if not generate by following &lt;a href=&quot;http://linuxrajib.blogspot.in/2013/04/ssh-login-without-password.html&quot; target=&quot;_blank&quot;&gt;this&lt;/a&gt;)&lt;/span&gt;&lt;/li&gt;
&lt;li&gt;&lt;span style=&quot;font-family: inherit;&quot;&gt;In local PC: install sshfs&lt;/span&gt;&lt;/li&gt;
&lt;li&gt;&lt;span style=&quot;font-family: inherit;&quot;&gt;ln local PC: sshfs remote-login-details:/directory-to-be-mounted /mount-point-in-local-PC&lt;/span&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;span style=&quot;font-family: inherit;&quot;&gt;To unmount, use:&lt;/span&gt;&lt;br /&gt;
&lt;ul&gt;
&lt;li&gt;&lt;span style=&quot;font-family: Courier New, Courier, monospace;&quot;&gt;fusermount -u /mount-point-in-local-PC&lt;/span&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/8574919586009165333/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/mounting-remote-directory-to-local-pc.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8574919586009165333'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/8574919586009165333'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/mounting-remote-directory-to-local-pc.html' title='Mounting a remote directory to local PC using ssh'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-7831768847140294153</id><published>2013-04-04T17:39:00.000+05:30</published><updated>2015-06-18T23:46:00.125+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="ssh"/><title type='text'>SSH login without password</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;h2 style=&quot;text-align: left;&quot;&gt;
Password less login over SSH&lt;/h2&gt;
First log in on A as user a and generate a pair of authentication keys. Do not enter a passphrase:&lt;br /&gt;
&lt;br /&gt;
&lt;code&gt;a@A:~&amp;gt; ssh-keygen -t rsa&lt;br /&gt;Generating public/private rsa key pair.&lt;br /&gt;Enter file in which to save the key (/home/a/.ssh/id_rsa):&lt;br /&gt;Created directory &#39;/home/a/.ssh&#39;.&lt;br /&gt;Enter passphrase (empty for no passphrase):&lt;br /&gt;Enter same passphrase again:&lt;br /&gt;Your identification has been saved in /home/a/.ssh/id_rsa.&lt;br /&gt;Your public key has been saved in /home/a/.ssh/id_rsa.pub.&lt;br /&gt;The key fingerprint is:&lt;br /&gt;3e:4f:05:79:3a:9f:96:7c:3b:ad:e9:58:37:bc:37:e4 a@A&lt;/code&gt;&lt;br /&gt;
&lt;br /&gt;
Now use ssh to create a directory &lt;code&gt;~/.ssh&lt;/code&gt; as user b on B. (The directory may already exist, which is fine):&lt;br /&gt;
&lt;br /&gt;
&lt;code&gt;a@A:~&amp;gt; ssh b@B mkdir -p .ssh&lt;br /&gt;b@B&#39;s password:&lt;/code&gt;&lt;br /&gt;
&lt;br /&gt;
Finally append a&#39;s new public key to &lt;code&gt;b@B:.ssh/authorized_keys&lt;/code&gt; and enter b&#39;s password one last time:&lt;br /&gt;
&lt;br /&gt;
&lt;code&gt;a@A:~&amp;gt; cat .ssh/id_rsa.pub | ssh b@B &#39;cat &amp;gt;&amp;gt; .ssh/authorized_keys&#39;&lt;br /&gt;b@B&#39;s password:&lt;/code&gt;&lt;br /&gt;
&lt;br /&gt;
From now on you can log into B as b from A as a without password:&lt;br /&gt;
&lt;br /&gt;
&lt;code&gt;a@A:~&amp;gt; ssh b@B hostname&lt;br /&gt;B&lt;/code&gt;&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;N.B.&lt;/b&gt;: Depending on your version of SSH you might also have to do the following changes:&lt;br /&gt;
&lt;br /&gt;
* Put the public key in &lt;code&gt;.ssh/authorized_keys2&lt;/code&gt;&lt;br /&gt;
* Change the permissions of &lt;code&gt;.ssh&lt;/code&gt; to 700&lt;br /&gt;
* Change the permissions of &lt;code&gt;.ssh/authorized_keys2&lt;/code&gt; to 640&lt;br /&gt;
&lt;br /&gt;
Thanks to the source, link is&lt;br /&gt;
&lt;a href=&quot;http://linuxproblem.org/art_9.html&quot;&gt;http://linuxproblem.org/art_9.html&lt;/a&gt;&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/7831768847140294153/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/ssh-login-without-password.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7831768847140294153'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7831768847140294153'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/ssh-login-without-password.html' title='SSH login without password'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-7226893650768734033</id><published>2013-04-04T17:18:00.001+05:30</published><updated>2017-11-03T13:26:20.915+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="grace"/><category scheme="http://www.blogger.com/atom/ns#" term="symbols"/><title type='text'>Grace Few Tips</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
XMGRACE and More&lt;br /&gt;
&lt;br /&gt;
Xmgrace is very nice software to create 2D plot. However, few things are not that &quot;User friendly&quot;, one needs careful search for that. Although &lt;a href=&quot;http://plasma-gate.weizmann.ac.il/Grace/doc/UsersGuide.html&quot;&gt;Grace User Guide&lt;/a&gt; and &lt;a href=&quot;http://plasma-gate.weizmann.ac.il/Grace/phpbb/&quot;&gt;Grace forum&lt;/a&gt; are available to help user, I would like to list few tips which I need to use more frequently.&lt;br /&gt;
&lt;br /&gt;
&lt;b&gt;Subscript &amp;amp; Superscript &lt;/b&gt;&lt;br /&gt;
Subscript&lt;br /&gt;
Let say we would like to write A&lt;sub&gt;b&lt;/sub&gt; then the xmgrace syntax for that is&lt;br /&gt;
&lt;br /&gt;
A\sb\N&lt;br /&gt;
&lt;br /&gt;
Superscript&lt;br /&gt;
Let say we would like to write A&lt;sup&gt;b&lt;/sup&gt; then the xmgrace syntax for that is&lt;br /&gt;
&lt;br /&gt;
A\Sb\N&lt;br /&gt;
&lt;br /&gt;
Symbol&lt;br /&gt;
The new method to insert special characters in xmgrace is:&lt;br /&gt;
Press ctrl-e while positioned in a text-edit field, the font dialog box will pop up&lt;br /&gt;
Select the desired font from the drop-down list.Use symbol to insert special symbols&lt;br /&gt;
Click on the desired character&lt;br /&gt;
Done!&lt;br /&gt;
&lt;br /&gt;
The other standard way of inserting special character is that writing the syntax (from the &lt;a href=&quot;http://linuxrajib.blogspot.in/2013/04/ascii-table.html&quot;&gt;ASCII table&lt;/a&gt;) in between \c and \C e.g.&lt;br /&gt;
&lt;br /&gt;
Angstrom (Å)&lt;br /&gt;
\cE\C&lt;br /&gt;
&lt;br /&gt;
Copyright (©)&lt;br /&gt;
\c)\C&lt;br /&gt;
&lt;br /&gt;
Link to ASCII character table is &lt;a href=&quot;http://linuxrajib.blogspot.in/2013/04/ascii-table.html&quot;&gt;here&lt;/a&gt;.&lt;br /&gt;
Changing The Default Settings&lt;br /&gt;
Find out the Default.agr file in your system (most likely it can be found in ~/.grace/templates/ or /usr/share/grace/templates/ folder. Make the changes and save it. The following things can be managed by editing this file&lt;br /&gt;
Linewidth&lt;br /&gt;
Default Font Size&lt;br /&gt;
Axis Font Size&lt;br /&gt;
Axis Width&lt;br /&gt;
Tick Label&lt;br /&gt;
Legends properties&lt;br /&gt;
Default Color Definition (For this search for @map color 7 to (220, 220, 220), &quot;grey&quot; kind of line)&lt;br /&gt;
Change the default settings to print to .png files with 300dpi:&lt;br /&gt;
&lt;br /&gt;
create the file ~/.grace/gracerc.user and enter the following text:&lt;br /&gt;
&lt;br /&gt;
HARDCOPY DEVICE &quot;PNG&quot;&lt;br /&gt;
DEVICE &quot;PNG&quot; DPI 300&lt;br /&gt;
&lt;div&gt;
&lt;div style=&quot;text-align: left;&quot;&gt;
&lt;ul style=&quot;text-align: left;&quot;&gt;&lt;ul&gt;
&lt;/ul&gt;
&lt;/ul&gt;
&lt;/div&gt;
&lt;/div&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/7226893650768734033/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/xmgrace-few-tips.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7226893650768734033'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/7226893650768734033'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/xmgrace-few-tips.html' title='Grace Few Tips'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-3143427707129641881.post-6662259632217566355</id><published>2013-04-04T17:07:00.000+05:30</published><updated>2013-04-04T17:07:05.815+05:30</updated><category scheme="http://www.blogger.com/atom/ns#" term="ASCII TABLE"/><title type='text'>ASCII-TABLE</title><content type='html'>&lt;div dir=&quot;ltr&quot; style=&quot;text-align: left;&quot; trbidi=&quot;on&quot;&gt;
&lt;h2 style=&quot;text-align: left;&quot;&gt;
Common ascii table&amp;nbsp;&lt;/h2&gt;
&lt;table align=&quot;left&quot; cellpadding=&quot;3&quot; cellspacing=&quot;1&quot; style=&quot;background-color: #cccccc; width: 440px;&quot;&gt;
&lt;tbody&gt;
&lt;tr&gt;&lt;td&gt;33&lt;/td&gt;&lt;td&gt;!&lt;/td&gt;&lt;td&gt;¡&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;34&lt;/td&gt;&lt;td&gt;&quot;&lt;/td&gt;&lt;td&gt;¢&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;35&lt;/td&gt;&lt;td&gt;#&lt;/td&gt;&lt;td&gt;£&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;36&lt;/td&gt;&lt;td&gt;$&lt;/td&gt;&lt;td&gt;¤&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;37&lt;/td&gt;&lt;td&gt;%&lt;/td&gt;&lt;td&gt;¥&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;38&lt;/td&gt;&lt;td&gt;&amp;amp;&lt;/td&gt;&lt;td&gt;¦&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;39&lt;/td&gt;&lt;td&gt;&#39;&lt;/td&gt;&lt;td&gt;§&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;40&lt;/td&gt;&lt;td&gt;(&lt;/td&gt;&lt;td&gt;¨&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;41&lt;/td&gt;&lt;td&gt;)&lt;/td&gt;&lt;td&gt;©&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;42&lt;/td&gt;&lt;td&gt;*&lt;/td&gt;&lt;td&gt;ª&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;43&lt;/td&gt;&lt;td&gt;+&lt;/td&gt;&lt;td&gt;«&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;44&lt;/td&gt;&lt;td&gt;,&lt;/td&gt;&lt;td&gt;¬&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;45&lt;/td&gt;&lt;td&gt;-&lt;/td&gt;&lt;td&gt;­&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;46&lt;/td&gt;&lt;td&gt;.&lt;/td&gt;&lt;td&gt;®&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;47&lt;/td&gt;&lt;td&gt;/&lt;/td&gt;&lt;td&gt;¯&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;48&lt;/td&gt;&lt;td&gt;0&lt;/td&gt;&lt;td&gt;°&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;49&lt;/td&gt;&lt;td&gt;1&lt;/td&gt;&lt;td&gt;±&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;50&lt;/td&gt;&lt;td&gt;2&lt;/td&gt;&lt;td&gt;²&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;51&lt;/td&gt;&lt;td&gt;3&lt;/td&gt;&lt;td&gt;³&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;52&lt;/td&gt;&lt;td&gt;4&lt;/td&gt;&lt;td&gt;´&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;53&lt;/td&gt;&lt;td&gt;5&lt;/td&gt;&lt;td&gt;µ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;54&lt;/td&gt;&lt;td&gt;6&lt;/td&gt;&lt;td&gt;¶&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;55&lt;/td&gt;&lt;td&gt;7&lt;/td&gt;&lt;td&gt;·&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;56&lt;/td&gt;&lt;td&gt;8&lt;/td&gt;&lt;td&gt;¸&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;57&lt;/td&gt;&lt;td&gt;9&lt;/td&gt;&lt;td&gt;¹&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;58&lt;/td&gt;&lt;td&gt;:&lt;/td&gt;&lt;td&gt;º&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;59&lt;/td&gt;&lt;td&gt;;&lt;/td&gt;&lt;td&gt;»&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;60&lt;/td&gt;&lt;td&gt;&amp;lt;&lt;/td&gt;&lt;td&gt;¼&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;61&lt;/td&gt;&lt;td&gt;=&lt;/td&gt;&lt;td&gt;½&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;62&lt;/td&gt;&lt;td&gt;&amp;gt;&lt;/td&gt;&lt;td&gt;¾&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;63&lt;/td&gt;&lt;td&gt;?&lt;/td&gt;&lt;td&gt;¿&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;64&lt;/td&gt;&lt;td&gt;@&lt;/td&gt;&lt;td&gt;À&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;65&lt;/td&gt;&lt;td&gt;A&lt;/td&gt;&lt;td&gt;Á&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;66&lt;/td&gt;&lt;td&gt;B&lt;/td&gt;&lt;td&gt;Â&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;67&lt;/td&gt;&lt;td&gt;C&lt;/td&gt;&lt;td&gt;Ã&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;68&lt;/td&gt;&lt;td&gt;D&lt;/td&gt;&lt;td&gt;Ä&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;69&lt;/td&gt;&lt;td&gt;E&lt;/td&gt;&lt;td&gt;Å&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;70&lt;/td&gt;&lt;td&gt;F&lt;/td&gt;&lt;td&gt;Æ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;71&lt;/td&gt;&lt;td&gt;G&lt;/td&gt;&lt;td&gt;Ç&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;72&lt;/td&gt;&lt;td&gt;H&lt;/td&gt;&lt;td&gt;È&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;73&lt;/td&gt;&lt;td&gt;I&lt;/td&gt;&lt;td&gt;É&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;74&lt;/td&gt;&lt;td&gt;J&lt;/td&gt;&lt;td&gt;Ê&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;75&lt;/td&gt;&lt;td&gt;K&lt;/td&gt;&lt;td&gt;Ë&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;76&lt;/td&gt;&lt;td&gt;L&lt;/td&gt;&lt;td&gt;Ì&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;77&lt;/td&gt;&lt;td&gt;M&lt;/td&gt;&lt;td&gt;Í&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;78&lt;/td&gt;&lt;td&gt;N&lt;/td&gt;&lt;td&gt;Î&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;79&lt;/td&gt;&lt;td&gt;O&lt;/td&gt;&lt;td&gt;Ï&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;80&lt;/td&gt;&lt;td&gt;P&lt;/td&gt;&lt;td&gt;Ð&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;81&lt;/td&gt;&lt;td&gt;Q&lt;/td&gt;&lt;td&gt;Ñ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;82&lt;/td&gt;&lt;td&gt;R&lt;/td&gt;&lt;td&gt;Ò&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;83&lt;/td&gt;&lt;td&gt;S&lt;/td&gt;&lt;td&gt;Ó&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;84&lt;/td&gt;&lt;td&gt;T&lt;/td&gt;&lt;td&gt;Ô&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;85&lt;/td&gt;&lt;td&gt;U&lt;/td&gt;&lt;td&gt;Õ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;86&lt;/td&gt;&lt;td&gt;V&lt;/td&gt;&lt;td&gt;Ö&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;87&lt;/td&gt;&lt;td&gt;W&lt;/td&gt;&lt;td&gt;×&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;88&lt;/td&gt;&lt;td&gt;X&lt;/td&gt;&lt;td&gt;Ø&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;89&lt;/td&gt;&lt;td&gt;Y&lt;/td&gt;&lt;td&gt;Ù&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;90&lt;/td&gt;&lt;td&gt;Z&lt;/td&gt;&lt;td&gt;Ú&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;91&lt;/td&gt;&lt;td&gt;[&lt;/td&gt;&lt;td&gt;Û&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;92&lt;/td&gt;&lt;td&gt;\&lt;/td&gt;&lt;td&gt;Ü&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;93&lt;/td&gt;&lt;td&gt;]&lt;/td&gt;&lt;td&gt;Ý&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;94&lt;/td&gt;&lt;td&gt;^&lt;/td&gt;&lt;td&gt;Þ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;95&lt;/td&gt;&lt;td&gt;_&lt;/td&gt;&lt;td&gt;ß&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;96&lt;/td&gt;&lt;td&gt;`&lt;/td&gt;&lt;td&gt;à&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;97&lt;/td&gt;&lt;td&gt;a&lt;/td&gt;&lt;td&gt;á&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;98&lt;/td&gt;&lt;td&gt;b&lt;/td&gt;&lt;td&gt;â&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;99&lt;/td&gt;&lt;td&gt;c&lt;/td&gt;&lt;td&gt;ã&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;100&lt;/td&gt;&lt;td&gt;d&lt;/td&gt;&lt;td&gt;ä&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;101&lt;/td&gt;&lt;td&gt;e&lt;/td&gt;&lt;td&gt;å&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;102&lt;/td&gt;&lt;td&gt;f&lt;/td&gt;&lt;td&gt;æ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;103&lt;/td&gt;&lt;td&gt;g&lt;/td&gt;&lt;td&gt;ç&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;104&lt;/td&gt;&lt;td&gt;h&lt;/td&gt;&lt;td&gt;è&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;105&lt;/td&gt;&lt;td&gt;i&lt;/td&gt;&lt;td&gt;é&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;106&lt;/td&gt;&lt;td&gt;j&lt;/td&gt;&lt;td&gt;ê&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;107&lt;/td&gt;&lt;td&gt;k&lt;/td&gt;&lt;td&gt;ë&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;108&lt;/td&gt;&lt;td&gt;l&lt;/td&gt;&lt;td&gt;ì&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;109&lt;/td&gt;&lt;td&gt;m&lt;/td&gt;&lt;td&gt;í&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;110&lt;/td&gt;&lt;td&gt;n&lt;/td&gt;&lt;td&gt;î&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;111&lt;/td&gt;&lt;td&gt;o&lt;/td&gt;&lt;td&gt;ï&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;112&lt;/td&gt;&lt;td&gt;p&lt;/td&gt;&lt;td&gt;ð&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;113&lt;/td&gt;&lt;td&gt;q&lt;/td&gt;&lt;td&gt;ñ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;114&lt;/td&gt;&lt;td&gt;r&lt;/td&gt;&lt;td&gt;ò&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;115&lt;/td&gt;&lt;td&gt;s&lt;/td&gt;&lt;td&gt;ó&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;116&lt;/td&gt;&lt;td&gt;t&lt;/td&gt;&lt;td&gt;ô&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;117&lt;/td&gt;&lt;td&gt;u&lt;/td&gt;&lt;td&gt;õ&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;118&lt;/td&gt;&lt;td&gt;v&lt;/td&gt;&lt;td&gt;ö&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;119&lt;/td&gt;&lt;td&gt;w&lt;/td&gt;&lt;td&gt;÷&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;120&lt;/td&gt;&lt;td&gt;x&lt;/td&gt;&lt;td&gt;ø&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;121&lt;/td&gt;&lt;td&gt;y&lt;/td&gt;&lt;td&gt;ù&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;122&lt;/td&gt;&lt;td&gt;z&lt;/td&gt;&lt;td&gt;ú&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;123&lt;/td&gt;&lt;td&gt;{&lt;/td&gt;&lt;td&gt;û&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;124&lt;/td&gt;&lt;td&gt;|&lt;/td&gt;&lt;td&gt;ü&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;125&lt;/td&gt;&lt;td&gt;}&lt;/td&gt;&lt;td&gt;ý&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td&gt;126&lt;/td&gt;&lt;td&gt;~&lt;/td&gt;&lt;td&gt;þ&lt;/td&gt;&lt;/tr&gt;
&lt;/tbody&gt;&lt;/table&gt;
&lt;/div&gt;
</content><link rel='replies' type='application/atom+xml' href='http://linuxrajib.blogspot.com/feeds/6662259632217566355/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/ascii-table.html#comment-form' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/6662259632217566355'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/3143427707129641881/posts/default/6662259632217566355'/><link rel='alternate' type='text/html' href='http://linuxrajib.blogspot.com/2013/04/ascii-table.html' title='ASCII-TABLE'/><author><name>Rajib</name><uri>http://www.blogger.com/profile/17120993567090471379</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='32' height='32' src='//blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEiSo9GxvQkRj4L_4pE-qfVeZ_L5_9IFlp5UvzELd8GaelD5OSFWY7zmF0g-Yz7HAEJLjf5MI4QQewg65RDwcsUgyTDL1KAppTh7s2SBFAKTkGxCJzlAhPKGrfl6gOUj3UM/s91/self.jpg'/></author><thr:total>0</thr:total></entry></feed>