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	<title>Peer reviewed publications authored by Duncan Hull</title>
	<link href="http://www.cs.man.ac.uk/~hulld/publications.xml" rel="self"/>
	<updated>2007-10-21T18:30:02Z</updated>
	<author>
		<name>Duncan Hull</name>
		<email>firstname.surname@cs.man.ac.uk</email>
	</author>
	<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/publications.xml</id>
	<entry>
		<title>Data curation + process curation = data integration + science</title>
		<link href="http://pubmed.gov/19060304"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:24</id>
		<updated>2008-12-09T17:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Carole Goble, Robert Stevens, Duncan Hull, Katy Wolstencroft, Rodrigo Lopez  (2008)  <a href="http://dx.doi.org/10.1093/bib/bbn034">Data curation + process curation = data integration + science</a>,  Briefings in Bioinformatics, epub ahead of print, <a href="http://dx.doi.org/10.1093/bib/bbn034">DOI:10.1093/bib/bbn034</a>, <a href="http://pubmed.gov/19060304">pmid:19060304</a></p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web</title>
		<link href="http://dx.doi.org/10.1371/journal.pcbi.1000204"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:23</id>
		<updated>2008-10-31T07:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull, Steve Pettifer and Douglas B. Kell  (2008) <a href="http://dx.doi.org/10.1371/journal.pcbi.1000204">Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web</a>,  PLoS Computational Biology, 4(10):e1000204+. DOI:10.1371/journal.pcbi.1000204, <a href="http://pubmed.gov/18974831">pmid:18974831</a>, <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?&amp;artid=2568856">pmcid:2568856</a></p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>GO faster ChEBI with Reasonable Biochemistry</title>
		<link href="http://precedings.nature.com/documents/2329/version/1"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:22</id>
		<updated>2008-09-25T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (2008) <a href="http://precedings.nature.com/documents/2329/version/1">GO faster ChEBI with Reasonable Biochemistry</a>,  Proceedings of <a href="http://www.webont.org/owled/2008/">OWL: Experiences and Directions (OWLED 2008) Fifth International Workshop, Karlsruhe, Germany, October 26-27, 2008</a>. Available from Nature Precedings <a href="http://dx.doi.org/10101/npre.2008.2329.1">DOI:10101/npre.2008.2329.1</a></p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Semantic Matching of Bioinformatic Web Services</title>
		<link href="http://www.cs.man.ac.uk/~hulld/phd/"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:21</id>
		<updated>2008-05-07T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (2008) <a href="http://www.cs.man.ac.uk/~hulld/phd/" title="PhD thesis">Semantic Matching of Bioinformatic Web Services</a>, A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Engineering and Physical Sciences, School of Computer Science.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Taverna / myGrid: aligning a workflow system with the life sciences community</title>
		<link href="http://www.amazon.co.uk/exec/obidos/ASIN/1846285194"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:20</id>
		<updated>2007-04-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Tom Oinn, Peter Li, Douglas B. Kell, Carole Goble, Antoon Goderis, Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi and Jun Zhao (2007) <a href="http://dx.doi.org/10.1007/978-1-84628-757-2_19">Taverna / myGrid: aligning a workflow system with the life sciences community</a> <i>In</i> <a href="http://www.amazon.co.uk/exec/obidos/ASIN/1846285194">Workflows for e-Science: scientific workflows for Grids</a> (isbn:9781846285196, isbn:1846285194, <a href="http://dx.doi.org/10.1007/978-1-84628-757-2_19">chapter DOI:10.1007/978-1-84628-757-2_19</a> and <a href="http://dx.doi.org/10.1007/978-1-84628-757-2">book DOI:	10.1007/978-1-84628-757-2</a>) editors Ian J. Taylor, Ewa Deelman, Dennis B. Gannon and Matthew Shields), pp. 300-319. Springer, Guildford.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>The myGrid Ontology: Bioinformatics Service Discovery</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/IJBRA_3304_Wolstencroft.pdf"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:19</id>
		<updated>2007-12-03T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Katy Wolstencroft, Pinar Alper, Duncan Hull, Chris Wroe, Phillip Lord, Robert Stevens and Carole Goble (2007) <a href="http://www.cs.man.ac.uk/~hulld/papers/IJBRA_3304_Wolstencroft.pdf">The myGrid Ontology: Bioinformatics Service Discovery</a> in International Journal of Bioinformatics Research and Applications  (IJBRA), volume 3, pages 303-325. <a href="http://www.pubmed.gov/18048194">pmid:18048194</a>, <a href="http://dx.doi.org/10.1504/IJBRA.2007.015005">DOI:10.1504/IJBRA.2007.015005</a></p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Knowledge Discovery for Biology with Taverna: Producing and Consuming Semantics in the Web of Science</title>
		<link href="http://dx.doi.org/10.1007/978-0-387-48438-9_17"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:18</id>
		<updated>2006-09-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Carole Goble, Katy Wolstencroft, Antoon Goderis, Duncan Hull, Jun Zhao, Pinar Alper, Phillip Lord, Chris Wroe, Khalid Belhajjame, Daniele Turi, Robert Stevens, Tom Oinn and David De Roure (2006) <a href="http://dx.doi.org/10.1007/978-0-387-48438-9_17">Knowledge Discovery for Biology with Taverna: Producing and Consuming Semantics in the Web of Science</a> in <a href="http://www.amazon.co.uk/exec/obidos/ASIN/0387484361">Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences</a> edited by Christopher J.O. Baker and Kei-Hoi Cheung (ISBN:0387484361 and <a href="http://dx.doi.org/10.1007/978-0-387-48438-9_17">chapter DOI:10.1007/978-0-387-48438-9_17</a> in <a href="http://dx.doi.org/10.1007/978-0-387-48438-9">book DOI:10.1007/978-0-387-48438-9</a>) see <a href="http://www.nodalpoint.org/2006/12/12/semweb_lifesci_book" title="ISBN:0387484361">book details</a>
				</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Using Distributed Data and Tools in Bioinformatics Applications</title>
		<link href="http://www.amazon.co.uk/exec/obidos/ASIN/3527312781"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:17</id>
		<updated>2006-08-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Robert Stevens, Phillip Lord and Duncan Hull (2006) Using Distributed Data and Tools in Bioinformatics Applications <i>in</i> <a href="http://www.amazon.co.uk/exec/obidos/ASIN/3527312781">Bioinformatics - From Genomes to Therapies (Vol. III)</a> edited by Thomas Lengauer (ISBN:3527312781)</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Deciding Semantic Matching of Stateless Services</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/HZBH+06.pdf"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:16</id>
		<updated>2006-07-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull, Evgeny Zolin, Andrey Bovykin, Ian Horrocks, Ulrike Sattler and Robert Stevens (2006) <a href="http://www.cs.man.ac.uk/~hulld/papers/HZBH+06.pdf">Deciding Semantic Matching of Stateless Services</a>. In Proceedings of the <a href="http://www.aaai.org/Conferences/AAAI/aaai06.php" title="American Association of Artificial Intelligence">Twenty-First National Conference on Artificial Intelligence (AAAI-06) and Eighteenth Innovative Applications of Artificial Intelligence (IAAI-06) Conference</a>, pages 1319-1324, Boston, MA, USA, July 16-20, (ISBN:9781577352815) special track on <a href="http://www.aaai.org/Conferences/AAAI/2006/aaai06webtrack.php" title="Artificial Intelligence on the Web">AI and the Web</a>
				</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Taverna: A tool for building and running workflows of services</title>
		<link href="http://dx.doi.org/10.1093/nar/gkl320"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:15</id>
		<updated>2006-05-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole Goble, Matthew Pocock, Peter Li and Tom Oinn (2006) <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1538887">Taverna: A tool for building and running workflows of services</a> In <i>Nucleic Acids Research</i>34:W729-W732 (Web Server Issue), (ISSN:13624962) published by Oxford University Press. <a href="http://www.pubmed.gov/16845108">pmid:16845108</a>, <a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?&amp;artid=1538887">pmcid:1538887</a> and <a href="http://dx.doi.org/10.1093/nar/gkl320" title="DOI:10.1093/nar/gkl320">DOI:10.1093/nar/gkl320</a> 
				</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Data integration in myGrid with Taverna</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/PRINT_DUNCAN.pdf"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:14</id>
		<updated>2006-04-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (2006) <a href="http://www.cs.man.ac.uk/~hulld/papers/PRINT_DUNCAN.pdf">Data integration in myGrid with Taverna (abstract)</a> in the <a href="http://www.wfcc.info/sympo/20060317/en/">First International Workshop on the Interoperability of Biological Information Resources (IBIR 2006)</a>, Tokyo, Japan, organised by the <a href="http://www.ddbj.nig.ac.jp/Welcome-j.html">DNA Data Bank of Japan (DDBJ)</a>, National Institute of Genetics.
				</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Taverna: Lessons in creating a workflow environment for the life sciences</title>
		<link href="http://dx.doi.org/10.1002/cpe.993"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:11</id>
		<updated>2006-03-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Tom Oinn, Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat and Chris Wroe (2006) <a href="http://dx.doi.org/10.1002/cpe.993">Taverna: Lessons in creating a workflow environment for the life sciences</a> in <i>Concurrency and Computation: Practice and Experience</i> 18: 1067-1100 (ISSN:15320626) <a href="http://dx.doi.org/10.1002/cpe.993">DOI:10.1002/cpe.993</a></p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Biological Web Services</title>
		<link href="http://taverna.sourceforge.net/services"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:13</id>
		<updated>2006-02-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (2006) <a href="http://taverna.sourceforge.net/services">Biological Web Services</a>, Technical Report, University of Manchester.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Description and classification of shims in myGrid</title>
		<link href="http://www.cs.man.ac.uk/~hulld/shims.html"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:12</id>
		<updated>2006-01-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (2006) <a href="http://www.cs.man.ac.uk/~hulld/shims.html">Description and classification of shims in myGrid</a>, Technical Report, University of Manchester</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Describing Web Services for user-oriented retrieval</title>
		<link href="http://www.w3.org/2005/04/FSWS/Submissions/52/DescribingWebServicesForUserOrientedRetrieval.pdf"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:10</id>
		<updated>2005-10-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull, Robert Stevens and Phillip Lord (2005) <a href="http://www.w3.org/2005/04/FSWS/Submissions/52/DescribingWebServicesForUserOrientedRetrieval.pdf">Describing Web Services for user-oriented retrieval</a>. <a href="http://www.w3.org/2005/04/FSWS/accepted-papers.html" title="Accepted papers">Accepted paper and presentation</a> in <i><a href="http://www.w3.org/2005/01/ws-swsf-cfp.html">W3C Workshop on Frameworks for Semantics in Web Services</a>, </i> Digital Enterprise Research Institute (DERI), Innsbruck, Austria.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Applying Semantic Web Services to bioinformatics: Experiences gained, lessons learnt</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/applying_semantic_web_services_to_bioinformatics.pdf"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:8</id>
		<updated>2004-04-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Phillip Lord, Sean Bechhofer, Mark Wilkinson, Gary Schiltz, Damian Gessler, Duncan Hull, Carole Goble and Lincoln Stein (2004) <a href="http://www.cs.man.ac.uk/~hulld/papers/applying_semantic_web_services_to_bioinformatics.pdf">Applying Semantic Web Services to bioinformatics: Experiences gained, lessons learnt</a>.  In <i><a href="http://iswc2004.semanticweb.org/">Third International Semantic Web Conference (ISWC2004)</a></i>, Hiroshima, Japan. pages 350-364, <a href="http://dx.doi.org/10.1007/b102467">full conference sproceedings DOI:10.1007/b102467</a>.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>The Semantic Web: Service discovery and provenance in myGrid</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/applying_semantic_web_services_to_bioinformatics.pdf"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:7</id>
		<updated>2004-03-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>Phillip Lord, Pinar Alper, Chris Wroe, Robert Stevens, Carole Goble, Jun Zhao, Duncan Hull and Mark Greenwood (2004) <a href="http://lists.w3.org/Archives/Public/public-swls-ws/2004Sep/att-0016/semantic_web_for_life_sciences_position.pdf">The Semantic Web: Service discovery and provenance in myGrid</a>.  In <i><a href="http://www.w3.org/2004/10/swls-workshop-report.html" title="Summary Report - W3C Workshop on Semantic Web for Life Sciences">W3C Workshop on Semantic Web for Life Sciences</a></i>, Cambridge, Massachusetts USA.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Treating shimantic web syndrome with ontologies</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/shimantic_web_syndrome.pdf"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:6</id>
		<updated>2004-02-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull, Robert Stevens, Phillip Lord, Chris Wroe and Carole Goble (2004) <a href="http://www.cs.man.ac.uk/~hulld/papers/shimantic_web_syndrome.pdf">Treating shimantic web syndrome with ontologies</a>. In <i><a href="http://kmi.open.ac.uk/projects/akt/AKT-SWS-Workshop/">First Advanced Knowledge Technologies workshop on Semantic Web Services (AKT-SWS04)</a></i> KMi, The Open University, Milton Keynes, UK. (See <a href="http://sunsite.informatik.rwth-aachen.de/Publications/CEUR-WS/Vol-122/">Workshop proceedings CEUR-WS.org (ISSN:16130073)  Volume 122 - AKT-SWS04</a>)</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Integrating bioinformatics resources using shims</title>
		<link href="http://www.iscb.org/ismb2004/posters/duncan.hullATcs.man.ac.uk_445.html"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:5</id>
		<updated>2004-01-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull, Robert Stevens, Phillip Lord, and Carole Goble (2004) <a href="http://www.iscb.org/ismb2004/posters/duncan.hullATcs.man.ac.uk_445.html"> Integrating bioinformatics resources using shims.</a> In <i><a href="http://www.iscb.org/ismbeccb2004/" title="ISMB 2004">Twelfth International conference on Intelligent Systems for Molecular Biology (ISMB2004)</a></i> Glasgow, UK. <!--a href="http://www.iscb.org/ismb2004/cgi-bin/posterabstracts.cgi#New%20Frontiers">Short abstract (see G-27)</a-->
				</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Enabling Semantic Web Services in BioMOBY</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/masters_thesis.html"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:4</id>
		<updated>2003-10-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (2003) <a href="http://www.cs.man.ac.uk/~hulld/papers/masters_thesis.html">Enabling Semantic Web Services in BioMOBY</a>.  Master of Science thesis, University of Manchester.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>A user's guide to The Carbon Cycle</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/users_guide_carbon_cycle.html"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:3</id>
		<updated>1997-10-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (1997) <a href="http://www.cs.man.ac.uk/~hulld/papers/users_guide_carbon_cycle.html">A user's guide to The Carbon Cycle</a>. <i><a href="http://www.philipallan.co.uk/content.aspx?PAGE=PROD89:&amp;SUB=2">Biological Sciences Review (ISBN:09535365)</a></i>, 10(1):10-13, 1997.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>Signal transduction during embryogenesis in fucoid algae</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/signal_transduction_during_embryogenesis.html"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:2</id>
		<updated>1996-09-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (1996) <a href="http://www.cs.man.ac.uk/~hulld/papers/signal_transduction_during_embryogenesis.html">Signal transduction during embryogenesis in fucoid algae</a>. <i>Bachelor of Science dissertation</i>, School of Biological Sciences, University of Manchester, 1996.</p>
			</div>
		</summary>
	</entry>
	<entry>
		<title>The regulation of Carbon Dioxide efflux from a sub-arctic heathland</title>
		<link href="http://www.cs.man.ac.uk/~hulld/papers/carbon_dioxide_efflux.html"/>
		<id>tag:www.cs.man.ac.uk,1996-01-01:~hulld/oreally.xml:1</id>
		<updated>1996-10-19T18:30:02Z</updated>
		<summary type="xhtml">
			<div xmlns="http://www.w3.org/1999/xhtml">
				<p>
					Duncan Hull (1996) <a href="http://www.cs.man.ac.uk/~hulld/papers/carbon_dioxide_efflux.html">The regulation of Carbon Dioxide efflux from a sub-arctic heathland</a>. <i>Bachelor of Science project</i>, School of Biological Sciences, University of Manchester, 1996.</p>
			</div>
		</summary>
	</entry>
</feed>
