tag:blogger.com,1999:blog-385901762024-12-19T11:26:24.629+08:00GenePipe is dedicated to bioinformatics analysis on disease gene finding after SNP (single nucleotide polymorphism) markers are identified through an association study. To identify a good candidate disease-susceptibility gene, four major tasks are usually followed in bioinformatics analysis: sequence retrieval with quality check, candidate gene finding, SNP prioritization, and primer design for assays.Unknownnoreply@blogger.comBlogger129125tag:blogger.com,1999:blog-38590176.post-26107209048134929782021-04-16T14:54:00.005+08:002021-04-18T14:26:28.881+08:00<p>Thank you for all the support of GenePipe these years. Unfortunately, we have to announce our decision to shut down GenePipe permanently on May 19th, 2021 (GMT+8).</p><span><a name='more'></a></span> Thank you for everything you have done to support all of us during this time. <div class="separator" style="clear: both;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhTogM3-VimzGKrBQReLfB5e3GBCWN6kgnqxiGa_TqQMYBF0GwBG4dObQOGuo3GC2tH3a0z1r5o-aim74YJMckaIEdMEADXMoOd7F13GrEU19ZyndgnB8nxvm_4iz9ECKIMDRDSfw/s944/pzresult14.png" style="display: block; padding: 1em 0px; text-align: center;"><img alt="" border="0" data-original-height="944" data-original-width="876" height="600" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhTogM3-VimzGKrBQReLfB5e3GBCWN6kgnqxiGa_TqQMYBF0GwBG4dObQOGuo3GC2tH3a0z1r5o-aim74YJMckaIEdMEADXMoOd7F13GrEU19ZyndgnB8nxvm_4iz9ECKIMDRDSfw/s600/pzresult14.png" /></a></div> <div class="separator" style="clear: both;"><a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjDW2UC8XIz5vIdJ3RKaaihfgxt0zzaIpsrf59qoEnQuIdUy3ggTsPWcyD1waBoAJHxh5HBL0iasf2U86JR2nd9mDMPQGdcnaujo8lLLlLnp1T0H3tsEajdLO624KlbqBMPlwEPWA/s2423/variowatchpreview.png" style="display: block; padding: 1em 0px; text-align: center;"><img alt="" border="0" data-original-height="2423" data-original-width="1016" height="640" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjDW2UC8XIz5vIdJ3RKaaihfgxt0zzaIpsrf59qoEnQuIdUy3ggTsPWcyD1waBoAJHxh5HBL0iasf2U86JR2nd9mDMPQGdcnaujo8lLLlLnp1T0H3tsEajdLO624KlbqBMPlwEPWA/w269-h640/variowatchpreview.png" width="269" /></a></div>Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-91408366235551271762018-03-07T10:38:00.000+08:002018-03-07T10:48:28.939+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Due to power system maintenance, GenePipe will be offline from 13:00 March 9 to 15:00 March 12, 2018, GMT+8. We apologize for any inconvenience it may cause.<br /> <br /> Thank you in advance for your patience. Please contact us with any questions via&nbsp;<span class="anno"> genepipe@ncgm.sinica.edu.tw</span>. </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-87252428083412686002017-11-30T16:21:00.000+08:002017-11-30T16:21:34.835+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Fix URL to the visualized analysis result provided by VarioWatch</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-57150519321364528812017-11-24T10:40:00.000+08:002017-11-24T10:40:18.382+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Database information can be downloaded in VarioWatch - MegaQuery Download (GRCh38) </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-1115239956512656162017-11-14T00:48:00.000+08:002017-11-14T00:48:18.373+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Data of <a href="https://www.pharmgkb.org/">PharmGKB </a> is now incorporated into MegaQuery</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-71562599525033316252017-09-30T15:40:00.002+08:002017-09-30T15:40:16.848+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Fix bug of presenting information of ESE and ESS hexamers pattern</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-74252036603555557892017-09-27T11:41:00.002+08:002017-09-27T11:41:54.497+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Database information can be downloaded in VarioWatch - MegaQuery Download (GRCh37)</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-58182995090341267882017-08-22T23:46:00.001+08:002017-08-22T23:46:57.174+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> <ul style="text-align: left;"> <li>Fix link of NCBI Primer-BLAST and Primer3</li> <li>Fix bug of masking SNP with large deletion</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-91407469234279951262017-08-02T11:39:00.001+08:002017-08-02T18:25:05.172+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> <ul style="text-align: left;"> <li>Fixing bug of filtering annotated result by location when variant located transcript structure is uncertain.</li> <li><span class="st">Adjusting supported filter of different input format.</span></li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-33943367374263747972017-07-28T11:47:00.000+08:002017-07-28T11:47:05.746+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> <br /> Fix bug of primer design for genes on the reverse strand with snp masked.</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-35736386167440399642017-07-05T14:26:00.001+08:002018-03-07T10:49:34.886+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> <ol style="text-align: left;"> </ol> VarioWatch which based on Genome Reference Consortium Human Build 38 are released.</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-62365189391258681392017-03-24T17:33:00.001+08:002017-03-24T17:35:03.953+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> VarioWatch:<br /> <ul style="text-align: left;"> <li>Fix link of PubMed reference</li> </ul> SeqTool:<br /> <ul style="text-align: left;"> <li>Fix reference link of NCBI sequence </li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-44998742286199300142017-02-14T11:17:00.000+08:002017-02-14T11:18:03.524+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Due to power system maintenance, GenePipe will be unavailable from <span class="anno">18:00 February 14 to 12:00 February 16, 2017, GMT+8</span>. We apologize for any inconvenience.</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-82660076481700057952017-01-20T11:02:00.000+08:002017-01-20T11:03:18.265+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Exons affected by variants, HGVS name of deletion variants and inframe/frameshift evaluations are supported.</div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-44272986709301441292016-10-07T13:20:00.000+08:002016-10-07T13:20:04.575+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> VarioWatch:<br /> <ul style="text-align: left;"> <li>Fix:<b><span style="font-weight: normal;"><b> </b>retrieving reference from PubMed.</span></b></li> </ul> QualiSeq:<br /> <ul style="text-align: left;"> <li>Qualiseq is offline due to the insufficient manpower to maintain the latest data.</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-83007694920632664572016-10-07T13:11:00.005+08:002016-10-07T13:11:50.219+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> <ul> <li>Add phenotype data from COSMIC (v78) to MegaQuery.</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-90656633963554158392016-10-07T13:07:00.001+08:002016-10-07T13:10:33.145+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> <ul style="text-align: left;"> <li>Add phenotype data from clinvar to MegaQuery.</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-45263529041401825282015-02-16T10:56:00.001+08:002015-02-16T10:56:52.710+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> PrimerZ:<br /> <br /> <ul style="text-align: left;"> <li>Add chromosome information of <span class="st">compiled data files (.csv - Format).</span></li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-6080074371622452332015-02-11T11:12:00.002+08:002015-02-11T11:12:39.934+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> PrimerZ:<br /> <br /> <ul style="text-align: left;"> <li>Fix bug of query by Task ID .</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-11116169022673019342014-10-22T15:42:00.000+08:002017-01-12T15:50:53.727+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> <br /> <ul style="text-align: left;"> <li>Genepipe now is based on human genome assembly, NCBI Annotation Release 105.</li> <li>Update dbSNP version to dbSNP141.</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-91364444741190279152014-04-28T14:53:00.001+08:002014-04-28T14:53:42.128+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> QualiSeq:<br /> <ul style="text-align: left;"> <li>Fix bug of download sequence of chromosome X/Y .</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-67817305116994447562014-04-25T10:52:00.002+08:002014-04-25T10:52:54.305+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> PrimerZ:<br /> <ul style="text-align: left;"> <li>Add new species: Sheep (Genome assembly Oar_v3.1).</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-6008031469739976462014-04-03T15:53:00.000+08:002014-04-11T16:38:01.625+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> Database Update<br /> <ul style="text-align: left;"> <li>Genepipe now is based on human genome assembly, NCBI Annotation Release 104.</li> </ul> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-51988518411108437862014-03-11T15:50:00.001+08:002014-03-11T15:50:42.609+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> PrimerZ:<br /> <ol style="text-align: left;"> <li>Update Ensembl database to release 75.</li> <li>Bug fix. </li> </ol> </div> Unknownnoreply@blogger.comtag:blogger.com,1999:blog-38590176.post-56604201478557489422013-12-27T17:11:00.000+08:002013-12-27T17:11:14.785+08:00<div dir="ltr" style="text-align: left;" trbidi="on"> PrimerZ:<br /> <br /> <ol> <li>Update Ensembl database to release 74.</li> </ol> </div> Unknownnoreply@blogger.com